Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq950 98.7 8e-16 seq956 82.4 6e-11 >seq950 Length=1857967 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 21139 ACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGC 21198 ||||| || || || || || || ||||| || || || ||||| || || |||| | | Sbjct 280995 ACGTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGC-C 280937 Query 21199 GTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTG 21257 || ||| |||||||| | ||||| || |||||||| || | ||||| ||||| || || Sbjct 280936 GTGGGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATG 280877 Query 21258 AACGTGAAAGCCGTGC 21273 |||||||||||||||| Sbjct 280876 AACGTGAAAGCCGTGC 280861 >seq956 Length=3269709 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| ||||||||||| || | | | | ||||| Sbjct 2620870 CACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTC 2620811 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| || || ||| ||||||| | ||||||||| || | ||||| ||||| Sbjct 2620810 CAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTG 2620751 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||||| | | | || ||| |||||| || | ||| |||||||| Sbjct 2620750 AATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTT 2620691 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||| |||||||| ||||| Sbjct 2620690 GCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414567964656058