Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq907 93.3 3e-14 seq434 84.2 1e-11 >seq907 Length=590410 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 33172 TGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATCC---AATTGCT 33227 ||||||||| ||||| |||||||| || || | | ||| | | |||| ||||||| Sbjct 17855 TGTCGACTCCTTTTGAATATTGTAGTCGGATA----GGGTTCGCCCATCCTCTAATTGCT 17910 Query 33228 TTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCT 33287 | ||| || || | |||||||| || | ||||| |||||||| || ||| | Sbjct 17911 TACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCG 17970 Query 33288 GTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAA 33347 ||| || | | || | || | || | ||| || || ||||| |||||||| |||| Sbjct 17971 CTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAA 18030 Query 33348 GAGTTTTTACGAAAATTTGCATGTT 33372 | |||||||||||||| ||||| || Sbjct 18031 GGGTTTTTACGAAAATCTGCATTTT 18055 >seq434 Length=2816 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 33167 TGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGC 33226 |||| |||||||| || || || ||||| || || | | | ||| ||||| ||| Sbjct 108 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGC 167 Query 33227 TTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC--- 33283 ||||| ||||| | ||| ||||| |||| || ||||||||||| || |||| Sbjct 168 TTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTA 227 Query 33284 GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCC 33343 ||| || || | | |||| ||| | || | ||| |||| ||| || || ||||| Sbjct 228 GCC---TTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCA 284 Query 33344 GTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 || || || || ||||| || |||||| ||| Sbjct 285 GTGAGTGTCTTCACGAAGATCTGCATGATTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318773881957386