Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq948 199 9e-46 seq907 190 5e-43 seq956 136 9e-27 seq434 136 9e-27 >seq948 Length=1705571 Score = 199 bits (220), Expect = 9e-46 Identities = 469/695 (67%), Gaps = 20/695 (3%) Strand=Plus/Plus Query 268729 TGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGA 268788 ||| || ||| | | ||||| | || ||||| || |||||||| || || ||||| || Sbjct 191368 TGACATTTGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGA 191427 Query 268789 TCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATC 268848 | || | | ||| | | |||||| || | || | ||| | || ||||| Sbjct 191428 TTTGGCGAAGGACCTCACTGATTGGGAAGGCCTTAATGATGGCGAACGTCATTTCATATC 191487 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 |||| || | || |||||||||| |||||||| |||||||| ||||||||| ||| Sbjct 191488 TTATGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAA 191547 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTAT 268968 || ||| | || || || ||||| || || | ||||||||||| | || | || | Sbjct 191548 CTTTTGTAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGT 191607 Query 268969 AGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAA 269028 ||||| || ||||| || |||||| ||| | || ||||| || || | ||| || Sbjct 191608 CGAAAACATCCATTCCGAAATGTACTCTCTTCTGATTGATACCTACATTAAGGATC-CAG 191666 Query 269029 CGAAAAGAAAAGACTATTTTCTT-----CTATGAGAACTATGGACTGTGTGAGaaaaaaa 269083 | || | |||| ||| || | | ||| | || ||||| || ||| Sbjct 191667 TGGAACGC---GACTTTTTGTTTAACGCCGTTCAGA-CGCTGCCATGTGTTGCTAAGAAA 191722 Query 269084 TCTGAATGGGCTCTGAAATGGATAAACGATAGC---GCGCCTTACGGAGAAAGGTTAGTT 269140 | || |||||||| | ||||| |||| || || |||| || || |||| Sbjct 191723 GCCGATTGGGCTCTTAGGTGGATTGCAAATAGGAAGGCTCCATACGCCGAGCGGCTAGTG 191782 Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 || || || ||||| ||||| | |||||||| || || ||||| ||||||||||| | Sbjct 191783 GCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTC 191842 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| | || || |||||||| | || ||| ||||| ||||| ||| |||| ||| Sbjct 191843 AAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAA 191902 Query 269261 GGTTTACACTGCGACTTCGCTTG-TTTATTATTTACTAATTATCTTTCACACAAACCTTC 269319 || | ||| |||||| || || ||||| |||| | ||| | ||| |||||||| | Sbjct 191903 GGCCTCCACACCGACTTTGCATGCCTTATT-TTTA-AACATAT-TGTCA-ACAAACCTAC 191958 Query 269320 TCAAGATAGAGTATACGAAATTATAGATTCA-GCTGTTTCTGTAGAAACAGAATTTCTAA 269378 ||| ||||| || || ||||| || | || ||| | ||| |||||||| | Sbjct 191959 GGCAGAAAGAGTTTATGACATTAT-GAGGGAGGCGGTTAGCATTGAATGCGAATTTCTCA 192017 Query 269379 CGGAAGCTCTATCTATCGATCTTATCGGTATGAAT 269413 | || || || || || ||||||| || |||||| Sbjct 192018 CAGACGCATTACCTGTCAATCTTATTGGCATGAAT 192052 >seq907 Length=590410 Score = 190 bits (210), Expect = 5e-43 Identities = 185/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 104327 TTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAG 104386 || || || |||| ||| || || || || || | ||| || || || |||||||| ||| Sbjct 17820 TTCATACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAG 17879 Query 104387 TCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCA 104446 || ||||| |||| || || |||| ||| || ||||| || || |||| || ||||| Sbjct 17880 TCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCT 17939 Query 104447 GGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT 104506 || ||||| ||||||||||||||||| || ||||| || || || | || ||| || || Sbjct 17940 GGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGC 17999 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| ||||| ||||| || |||||||| |||||||| || ||||||||||||| Sbjct 18000 TCAACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTTGT 18057 >seq956 Length=3269709 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||||||||| |||||||||| | | || || Sbjct 2620873 AAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATC 2620814 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || | || || ||||||||||| || | ||| ||||| || || || || || || || Sbjct 2620813 CTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTC 2620754 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || |||||||| || | | ||| ||| || ||||| || || || || Sbjct 2620753 TTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGT 2620694 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| ||||||||||| |||||||| Sbjct 2620693 TTTGCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 >seq434 Length=2816 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||| || ||||| || || || | ||||| Sbjct 98 AAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTC 157 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | || ||||| || || || || | ||| ||||| || || || |||||||| || Sbjct 158 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 217 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| || || || || |||| | || ||||| || ||||| | |||||||| Sbjct 218 TTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 277 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| ||||| || || || |||||||| Sbjct 278 CTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384282056556