Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq956 100 2e-16 seq907 91.5 1e-13 >seq956 Length=3269709 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||| ||||| |||| || ||| | ||||||| |||| Sbjct 2620863 TGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGC 2620804 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | |||||||||||| || | || |||||||| ||| || Sbjct 2620803 TTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTA 2620744 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | | || | ||| | || ||| ||| | ||||||||||| || || Sbjct 2620743 GCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTA 2620684 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 |||||||| |||||||||||||| Sbjct 2620683 AGAGTTTTTACAAAAATCTGCAT 2620661 >seq907 Length=590410 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | |||| || | |||||||| |||||||||||| ||||| || | Sbjct 17825 ACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17884 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | |||| | ||||| | |||||||| || | || | || |||||||| ||| Sbjct 17885 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGG 17944 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||| || ||| ||||||| || | | | |||| ||| | | ||| Sbjct 17945 TATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 18004 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||| ||||| || || || ||||| || ||||||||||| Sbjct 18005 CTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCAT 18052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421246286762957