Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq956 109 5e-19 seq907 96.9 3e-15 seq434 95.1 1e-14 >seq956 Length=3269709 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||| || || |||| || | | ||||||||||| |||||||| || || Sbjct 2620816 ATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTT 2620757 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| || | | || |||| | ||||| |||| || || Sbjct 2620756 GTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTAT 2620697 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||| |||||||||||||| ||||| |||||||||| Sbjct 2620696 GGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCATGC 2620659 >seq907 Length=590410 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || |||||||| | || || ||| |||| ||| | |||||| | || || | Sbjct 17856 GTCGACTCCTTTTGAATATTGTAGTCGG--ATAGGGTTCGCCCATCCTCTAATTGCTTAC 17913 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| | | |||||||||||| || ||||||||||| || | |||||| || | Sbjct 17914 CAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTT 17973 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | ||| ||| | ||| | ||| || || |||| || || |||||||||||||| Sbjct 17974 TCACGTTCTCGATGGAATCA-CTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGG 18032 Query 94988 GTTTTCACAAAGATCTGCAT 95007 ||||| || || |||||||| Sbjct 18033 GTTTTTACGAAAATCTGCAT 18052 >seq434 Length=2816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||||| ||| || ||||| || | ||| || ||| | || | ||| || Sbjct 2807 CACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTC 2748 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || | ||||| || | |||||| ||||| ||||| || || ||||| | Sbjct 2747 CAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTG 2688 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||||| || | | ||||| | | || || || | |||||| || || Sbjct 2687 AATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTT 2628 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| ||||| ||||||||||| Sbjct 2627 GCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||||| ||| || ||||| || | ||| || ||| | || | || || Sbjct 101 CACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTC 160 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| ||||| | || || | | |||||||| || ||||| ||||||||||| | Sbjct 161 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 220 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||||| ||| | | | |||| | || || || | || || || || Sbjct 221 AATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTT 280 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 |||||| || || ||||| |||||||||||| ||| Sbjct 281 TCCAGTGAGTGTCTTCACGAAGATCTGCATGATTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448285837316520