Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq933 183 5e-42 seq678 131 3e-26 seq858 129 9e-26 seq648 123 4e-24 seq738 95.1 2e-15 >seq933 Length=1023842 Score = 183 bits (202), Expect = 5e-42 Identities = 188/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||| ||||||||||| || ||||| || ||||||||||| || |||||||| Sbjct 362904 TCTTCGCGATAATATCCAAGGAATAACTAAGCCTGCCATCCGTCGTCTTGCACGTCGTGG 362845 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| |||| || | |||| || |||| || | ||| |||| |||| Sbjct 362844 TGGCGTGAAGCGTATCTCCGGTCTCATCTACGAGGAGACCCGCGGTGTACTGAAAGTCTT 362785 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | | | |||||| | ||| ||| || |||||||||||||||||||| ||||| || Sbjct 362784 CTTGGAAAGCGTTATACGTGACGCTGTCACTTATACCGAGCACGCTAAACGCAAGACCGT 362725 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| ||||||| | || || ||| | || |||||||| |||| | | ||||| || || Sbjct 362724 CACAGCCATGGACGTAGTTTACGCACTAAAGCGTCAAGGGCGTACGCTATATGGCTTCGG 362665 Query 16693 AAGTTA 16698 |||| Sbjct 362664 TGGTTA 362659 >seq678 Length=37842 Score = 131 bits (144), Expect = 3e-26 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || || || || || ||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 27120 CGTGACAATATTCAGGGCATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGAGGTGGC 27061 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| | |||| || |||| || | ||| | || ||||||| Sbjct 27060 GTAAAACGCATCTCTGGGCTCATCTACGAGGAGACCCGAGGTGTGCTCAAAGTCTTCCTG 27001 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| ||| || || || ||||||||||| || || ||||| ||||| Sbjct 27000 GAGAACGTCATCCGTGACGCCGTCACGTACACCGAGCACGCGAAGCGCAAGACCGTCACT 26941 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| | || ||||| | ||||| || || |||| | || || ||||| || Sbjct 26940 GCCATGGACGTGGTGTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGGCGGT 26881 Query 16697 TA 16698 || Sbjct 26880 TA 26879 >seq858 Length=305029 Score = 129 bits (142), Expect = 9e-26 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||||||||| || || ||||| |||||||| ||||| || || |||||||| Sbjct 99991 CGTGACAACATCCAAGGCATTACAAAGCCTGCTATCCGACGTCTAGCACGCCGTGGTGGC 99932 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || ||||||| || |||| || |||| ||| ||| | ||||||||||| Sbjct 99931 GTAAAACGCATCTCTGGGCTGATCTACGAGGAGACTCGCATTGTGCTCAAGATCTTCCTG 99872 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | || || || || |||||||| || | || ||||| ||||| Sbjct 99871 GAGAGCGTCATTCGCGACGCAGTCGCATACACCGAGCATGCGAGGCGCAAGACCGTCACT 99812 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||| | ||||| || | ||||| || || |||| || || || || || Sbjct 99811 GCCTTGGACGTGGTCTACGCTCTCAAACGCCACGGTCGTACCATCTACGGCTTCGG 99756 >seq648 Length=25196 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 20698 CGTGATAACATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 20639 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || |||| || | |||| || |||| |||| || | ||| | ||||| Sbjct 20638 GTGAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 20579 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | || ||| || || || |||||||| || || ||||| || || Sbjct 20578 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 20519 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | |||||||| | ||||| || || |||| | || || ||||| Sbjct 20518 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 20463 Score = 123 bits (136), Expect = 4e-24 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||| ||||| || ||||| |||||||| ||||||||||| Sbjct 23647 CGTGATAACATCCAGGGTATCACGAAGCCCGCCATCCGGCGTCTGGCACGTCGTGGTGGC 23588 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || || |||| || | |||| || |||| |||| || | ||| | ||||| Sbjct 23587 GTGAAACGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTGCTCAAGGTTTTCCTG 23528 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | || ||| || || || |||||||| || || ||||| || || Sbjct 23527 GAGAATGTCATTCGCGACGCTGTCACGTACACTGAGCACGCGAAGCGCAAGACCGTTACT 23468 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| | |||||||| | ||||| || || |||| | || || ||||| Sbjct 23467 GCTATGGACGTGGTCTATGCTCTTAAACGCCAGGGTCGTACCCTCTACGGCTTTGG 23412 >seq738 Length=84888 Score = 95.1 bits (104), Expect = 2e-15 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || ||||| || | ||||| ||| | | ||||| |||||| | ||||| ||||| Sbjct 70839 CGTGACAACATTCAGGACATCACAAAGTCCACCATCCGACGTCTGTCACGTCGAGGTGGC 70898 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 | || || ||||||| | |||| || |||| | | ||| || ||||||| Sbjct 70899 ATGAAACGCATCTCTGGGCTCATCTAAGAGGAGACAAGAGGTGTGCCCAAAGTCTTCCTG 70958 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || |||| | | || ||| || || |||||||| || |||||||||||||| Sbjct 70959 GAGAACGGCATCCGTTACGCCTTCACGTACACTGAGCACGCGAAGCGTAAGACTGTCACT 71018 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 ||||| | | || ||||| | ||||| || || |||| Sbjct 71019 GCCATGAACGTGGTGTATGCTCTTAAACGCCAGGGTCGTA 71058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074325008201