Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq948 111 2e-19 >seq948 Length=1705571 Score = 111 bits (122), Expect = 2e-19 Identities = 381/593 (64%), Gaps = 14/593 (2%) Strand=Plus/Minus Query 21453 ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTA 21512 |||||| |||||||| || | |||||||| || || | |||||||||| || | Sbjct 191946 ACAATA--TGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGA 191889 Query 21513 TTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTG 21572 | || || || || || | || ||||| | || | ||| || | |||||| || | Sbjct 191888 TCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAG 191829 Query 21573 ACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCAC 21632 | ||||||| || |||||||||| ||| ||||| ||||| ||||| |||| || || Sbjct 191828 AAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGG 191769 Query 21633 CGTATGTAGATT--CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTT--A 21688 |||||| || | || | | |||| ||| | ||||| | || |||||| | Sbjct 191768 CGTATGGAGCCTTCCTATTTGCAAT--CCACCTAAGAGCCCAATCGGC--TTTCTTAGCA 191713 Query 21689 ATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATG 21748 | ||| | || | || || || || | | | ||| || ||| | ||| Sbjct 191712 ACACATGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATG 191653 Query 21749 NNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAAT 21808 | |||||||| ||||| || ||||| | || | || | Sbjct 191652 TAGGTATCAATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATC 191593 Query 21809 CCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGA--GCCAAGT 21866 ||||||||||| | ||||| | | ||| || ||| | |||| ||| | | | | Sbjct 191592 CCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGAT 191535 Query 21867 TTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 ||||||| || || ||||||||||| |||||||| ||||| | || ||| |||| | Sbjct 191534 TTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGAC 191475 Query 21927 GTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAG 21986 ||||| ||| | | || |||||| | || || | ||||| ||||| ||| Sbjct 191474 GTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAA 191415 Query 21987 TTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATAT 22039 |||||||||| |||| ||| || || || | ||| || |||| |||| Sbjct 191414 CTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATAT 191362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531894437136680