Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq948 291 1e-73 seq953 172 7e-38 >seq948 Length=1705571 Score = 291 bits (322), Expect = 1e-73 Identities = 522/754 (69%), Gaps = 19/754 (3%) Strand=Plus/Minus Query 33174 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGA 33233 ||||||||| || ||||| || || || | || | || |||||||| ||||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 33234 TACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTG-GATG-CAATAAATGT 33291 ||||| || | ||||| ||| ||||| | | ||| | || ||||| ||| Sbjct 191995 AACCGCCTCCCTCATAATGTCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATA--TGT 191938 Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 ||||| || | ||||| || ||| ||| || || || || | || || | |||||| Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || ||||| || ||||| || || ||||| || |||||||| || ||||| ||||| Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 ||||||||||| | ||||| || ||||| || || | || | ||| | || || | Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTA--TGGAG 191760 Query 33472 CTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCG 33526 | || | | |||||| | ||||||||||||| ||||| ||||| |||| || Sbjct 191759 CCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCG 191700 Query 33527 TTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATAAGTATCGAT 33584 | | | ||| ||||| | | ||| ||| ||| ||| |||| || ||||| || Sbjct 191699 TCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAAT 191642 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 || |||| |||||||| ||||| |||||||| | ||| | || | ||||| ||||| Sbjct 191641 CAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACA 191582 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACT 33702 | |||||||| ||| || ||||| ||||||| |||| | | ||||||||| || Sbjct 191581 ACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACG 191524 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 || || ||||||||||||||||| ||||| |||| ||| |||| |||| | Sbjct 191523 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA 191464 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || | ||||||| ||| || || | | ||| ||||| || ||||||||||| Sbjct 191463 TTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAG 191404 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACA 33882 || || | || || || || | | ||| ||||||| ||||||||| || | | ||| Sbjct 191403 GAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACG 191344 Query 33883 AATCTATTTGGATTTGGTGCAAGGATGGGTTCCA 33916 ||||| ||||| || |||| | ||||||| Sbjct 191343 AATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 191310 >seq953 Length=2188470 Score = 172 bits (190), Expect = 7e-38 Identities = 364/540 (67%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 63212 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63270 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 251880 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGC 251821 Query 63271 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 251820 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 251761 Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63390 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 251760 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 251701 Query 63391 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTAC 63450 ||| || | || | || | | ||| || | || |||||| || ||||| || | Sbjct 251700 GAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTAGTCC 251641 Query 63451 CGGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63508 | | ||| | | || | || ||| | | |||| ||||| ||||| || || Sbjct 251640 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCGATTCCACCAGC 251583 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 |||| ||||| | ||| ||| |||| | ||||||||| || ||||| || || ||||| Sbjct 251582 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCATC 251523 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 |||| |||| | ||| ||||| ||||| || || | || || |||||||| | Sbjct 251522 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAAAG 251463 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 || || ||||| || | ||||| ||| | || | |||||||||||||||||||| | Sbjct 251462 AGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAGCAGC 251403 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 251402 ATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939747994120