Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq956 109 5e-19 seq907 98.7 9e-16 seq434 98.7 9e-16 seq950 96.9 3e-15 >seq956 Length=3269709 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||| |||||||| ||||| ||||| || Sbjct 2620887 CCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGAT 2620828 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| | ||||||||| || | || | ||||||||| || || || Sbjct 2620827 AAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 2620768 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | ||| | || ||| | | ||||| Sbjct 2620767 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACC 2620708 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || ||||||||||| |||||||||||| Sbjct 2620707 TCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCATG 2620660 >seq907 Length=590410 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||||||||| ||||| ||| | ||| ||| ||||||| ||||| || Sbjct 17856 GTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCA 17915 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | || ||||| || || || || |||||||| || |||||| || Sbjct 17916 GCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTC 17975 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | | ||| | | ||| | || | || | ||||| || || || ||| Sbjct 17976 ACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTT 18035 Query 131218 TTTACGAAAATCTGCAT 131234 ||||||||||||||||| Sbjct 18036 TTTACGAAAATCTGCAT 18052 >seq434 Length=2816 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||||||||||| ||||||||||| ||| Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | |||||| || ||| | || | ||||||||| ||||| || Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| || || ||| | | ||| | | || | | ||| | Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | |||| || || || || || || || ||||| |||||||||| Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCATGA 312 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| | || | ||||||||||| ||||||||||| ||| | ||| || Sbjct 2813 ACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCC 2754 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || | |||||| || ||| |||| ||||| |||||||| || || || || || || Sbjct 2753 ATCTTCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTT 2694 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||| ||| | | ||| | || ||| ||| || | || | || | Sbjct 2693 GTCCTGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGAT 2634 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || | ||| || ||||| |||||||| Sbjct 2633 TGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 >seq950 Length=1857967 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 51810 GTTGCCGAGATCGCCCACGTGTCGCTCGGCGGAGTTGGGTGCGCCGTGGTGTTTGCCAAG 51869 ||| || || || || || |||||||| || | | || || || |||| |||||| | Sbjct 280993 GTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGCCGTG 280934 Query 51870 GGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGCCGAACTCGTGCAC 51929 |||||||||||| | ||||| || ||||| || || | ||||| ||||| || || || Sbjct 280933 GGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATGAAC 280874 Query 51930 GTGAAAGCCGTGC 51942 ||||||||||||| Sbjct 280873 GTGAAAGCCGTGC 280861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007153546880