Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq907 98.7 8e-16 seq434 87.8 1e-12 >seq907 Length=590410 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||||||| || || || | || || || ||||||||||| || |||||||||| Sbjct 17826 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17885 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | ||||| ||||| || || || | |||||||| || || || || Sbjct 17886 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGT 17945 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || ||||| || ||||| | ||||| | | | | || | ||||| Sbjct 17946 ATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACC 18005 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | || || |||||||| || || ||||| || |||||||||||||||| Sbjct 18006 TCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTTGT 18057 >seq434 Length=2816 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||||| | ||| | | || ||||| || Sbjct 2800 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGC 2741 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || ||||| | || | || || ||||| || | |||||| ||||| ||||| | Sbjct 2740 TTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTC 2681 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| ||| || |||| ||||| || || || ||| Sbjct 2680 GCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTC 2621 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || || || |||||||| Sbjct 2620 AAAGTCTTCACGAAGATCTGCAT 2598 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||||| | ||| | |||| ||||| || Sbjct 108 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGC 167 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || ||||| | || || ||||| || ||| || | ||| |||||||| ||| | Sbjct 168 TTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTA 227 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||| | ||||| |||| || || || ||||| || Sbjct 228 GCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTG 287 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || || || |||||||| Sbjct 288 AGTGTCTTCACGAAGATCTGCAT 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083275281430