Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq907 107 1e-18 seq434 105 4e-18 seq934 98.7 7e-16 seq819 98.7 7e-16 >seq907 Length=590410 Score = 107 bits (118), Expect = 1e-18 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||||||||||||||| || || | || | || |||||||| Sbjct 17850 TGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGC 17909 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || ||||| ||||| | || | |||||||| ||| |||||| Sbjct 17910 TTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTC 17969 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTAATAGTTTTACCC 38291 ||||| |||| || | || ||||| ||||| || | ||| |||||||| || Sbjct 17970 GCTTTCACGTTCTCGATGGAAT---CACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCA 18026 Query 38292 GTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | |||||| ||||| |||||||| || Sbjct 18027 GTAAGGGTTTTTACGAAAATCTGCATTTT 18055 >seq434 Length=2816 Score = 105 bits (116), Expect = 4e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| | || ||||| |||||| ||||| ||||| || || Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || || || ||||| || ||||| || || || ||||| | || Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||| || |||||| |||| | | || | | ||||| Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGCTC 38330 || || |||||||| || || || | || |||||||| ||||||||| || || |||| Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCATGATTAGCACGCTC 323 Query 38331 GAA 38333 || Sbjct 324 TAA 326 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||| | || ||||| |||||| ||||| ||||| || || | ||| | Sbjct 2813 ACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCC 2754 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || || || || || || || | ||||| || || | || | ||| || || Sbjct 2753 ATCTTCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTT 2694 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 |||| |||||| ||||||||||| | || || | |||||| || | || || Sbjct 2693 GTCCTGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGAT 2634 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || |||||||| |||||||| Sbjct 2633 TGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 >seq934 Length=1037200 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 19941 TCATTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG 20000 || || ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| Sbjct 876293 TCTTTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGG 876352 Query 20001 TCTCGCGGTAATATTTAGCCTT 20022 |||| | ||||||||||| Sbjct 876353 ACTCGTGCCTGTATTTAGCCTT 876374 >seq819 Length=201516 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 19941 TCATTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGG 20000 || || ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| Sbjct 91222 TCTTTACTCTCTCTTCAGAGTACTTTTCAACTTTCCCTCACGGTACTTGTCCGCTATCGG 91163 Query 20001 TCTCGCGGTAATATTTAGCCTT 20022 |||| | ||||||||||| Sbjct 91162 ACTCGTGCCTGTATTTAGCCTT 91141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943293364267