Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq948 291 1e-73 seq953 185 1e-41 >seq948 Length=1705571 Score = 291 bits (322), Expect = 1e-73 Identities = 506/727 (70%), Gaps = 23/727 (3%) Strand=Plus/Minus Query 32531 ACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGA 32590 ||||||||| || ||||| || || || | || | || |||||||| |||||| Sbjct 192055 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 191996 Query 32591 GACCGCGTCTGTTATAATAGATCTTA--CTGTTTCTTCACTCGGTGGAT--ACAATAAAT 32646 ||||| || | ||||| || || || ||||| | | ||| | |||||| | Sbjct 191995 AACCGCCTCCCTCATAATG--TCATAAACTCTTTCTGCCGTAGGTTTGTTGACAATA--T 191940 Query 32647 GTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGT 32706 ||||||| || | ||||| || ||| ||| || || || || | || || || |||| Sbjct 191939 GTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGT 191880 Query 32707 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 32766 || || ||||| || ||||| || || ||||| || |||||||| || || ||||||| Sbjct 191879 TGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATG 191820 Query 32767 ATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG 32826 | ||||||||||||| ||||| || || || || || | || | ||| | || || Sbjct 191819 AACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTAT--GG 191762 Query 32827 CGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 32881 || || | | |||||| | ||||||||||||| ||||| ||||| |||| Sbjct 191761 AGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 191702 Query 32882 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCA 32939 |||| | || ||||| | | ||| ||| ||| ||| |||| || |||||| Sbjct 191701 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCC--ACTGGATCCTTAATGTAGGTATCA 191644 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| |||| |||||||| ||||| |||||||| | ||| | ||| | ||||| || Sbjct 191643 ATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 191584 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT--GCTAAATTTTCATTCA 33057 || | |||||||| ||| || ||||| ||||||| |||| | || ||||||||| | Sbjct 191583 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAA 191526 Query 33058 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTG 33117 | || || ||||||||||||||||| ||||| |||| ||| |||| |||| | Sbjct 191525 CGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCAT 191466 Query 33118 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 | || | ||||||| ||| || || | | ||| ||||| || |||||||||| Sbjct 191465 CATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAA 191406 Query 33178 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 | || || | || || || || | | ||| |||||||||||||| || || | | || Sbjct 191405 AGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCATCACAA 191346 Query 33238 CAAATCT 33244 | ||||| Sbjct 191345 CGAATCT 191339 >seq953 Length=2188470 Score = 185 bits (204), Expect = 1e-41 Identities = 367/540 (68%), Gaps = 5/540 (1%) Strand=Plus/Minus Query 63067 CTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTC 63125 ||||| | || ||||| || ||||| ||||||||||| || | || ||||||| | | Sbjct 251880 CTTCAACACGCTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGC 251821 Query 63126 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185 | ||||||| || || ||||| | || | ||| || | ||| | ||||| Sbjct 251820 GAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCC 251761 Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATC 63245 ||||||| | || ||||| | | || || || || || || |||||||| | || | Sbjct 251760 ACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACC 251701 Query 63246 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 63305 ||| || | || | || | | ||| || | || ||| ||||| ||||| |||| Sbjct 251700 GAGCAGTACTGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCGCCATTAGTCC 251641 Query 63306 CTGAGATATAGCTTCCACTGGCACGAATATTACTA--ATTGATAGACCTATTCCCCCTGC 63363 | | ||| | | || | || ||| | | |||| ||||| ||||| || || Sbjct 251640 CAGCGATGAAAGTGCCCTTACTCCGGATACAATGAACATTG--AGACCGATTCCACCAGC 251583 Query 63364 CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATC 63423 |||| ||||| | ||| ||| |||| | ||| ||||| |||||||| ||||| ||||| Sbjct 251582 ACTTTTTGAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCATC 251523 Query 63424 CATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63483 |||| |||| | ||| ||||| ||||| || || | || || |||||||| | Sbjct 251522 TTTCATCGTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCAGCATTAAAAAG 251463 Query 63484 GGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63543 || || ||||| ||| | ||||| ||| | || | |||||||||||||||||||| | Sbjct 251462 AGTGGGTGAAGCATGAATCAACCACTTTCCGGACATGAGATTGTACGTCTCAATAGCAGC 251403 Query 63544 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 || | |||| ||| || || | | ||| ||||| ||||| | ||| || || || Sbjct 251402 ATCAAGATCCTCACCATGGATACCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 251343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624420177200