Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq907 104 2e-17 seq956 93.3 4e-14 >seq907 Length=590410 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || ||||| || | || || ||| | || ||| | || || ||| | Sbjct 18053 AATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17994 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | |||||| |||| || |||| ||| || |||||||| || || || || | Sbjct 17993 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAG-GATAAAGAAGGTATACCGCCAGATC 17935 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || ||| |||| || || || || |||||||| |||| || || | ||| |||| Sbjct 17934 AGCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACA 17875 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| || || || || || | || ||||| ||| ||||||| Sbjct 17874 ATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGG 17826 >seq956 Length=3269709 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| ||| | || || ||| |||| || | || || ||| | ||| Sbjct 2620661 ATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCCTTCT 2620720 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||| ||| | ||| | || | ||| ||||| || || |||||||| || || Sbjct 2620721 GATTCTATTGAGAATGTAAAGGCTAAGATTCAA-GACAAGGAGGGTATTCCACCAGATCA 2620779 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||| ||||| || || || |||| || | | || ||||| Sbjct 2620780 GCAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAA 2620839 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || || | ||||| Sbjct 2620840 TATTCAGAAGGAGTCAACCCTTCACCTTGTGCT 2620872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433322945905955