Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq948 250 3e-61 >seq948 Length=1705571 Score = 250 bits (276), Expect = 3e-61 Identities = 503/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTAC 92985 ||| || ||||| |||||| || |||| | ||||||||| || | |||| || Sbjct 192091 ATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATAAGATTGAC 192032 Query 92986 AGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTAT 93045 ||||| ||||| || | || || || || ||| || || ||| || || Sbjct 192031 AGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATAATGTCATA 191972 Query 93046 TACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGG 93104 ||||| | | || ||||| | || | || || | || | ||| |||||||||| Sbjct 191971 AACTCTT-TCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCATGCAAAGTCGG 191913 Query 93105 TATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTC 93164 | || | ||||| || || |||||||| |||||||| || | ||||| | || | Sbjct 191912 TGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGAC 191853 Query 93165 CTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGG 93224 | || |||||||||||||| || |||||||| ||||||||| || | ||||| || | Sbjct 191852 CGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAG 191793 Query 93225 CTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG---ATCCATTTTA 93281 | || |||||||| | || ||||| | || | || || | ||||| | | Sbjct 191792 CAGCGAATGCCACTAGCCGCTCGGCGTA---TGGAGCCTTCCTATTTGCAATCCACCTAA 191736 Query 93282 AAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAAT 93341 ||||||||||||||| || || ||| || || || | | |||||||| | | | Sbjct 191735 GAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAAGT 191676 Query 93342 CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGA 93401 | || || | | ||| ||||| ||||| || | ||||| |||||||| ||||||| Sbjct 191675 CGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATGGA 191616 Query 93402 CATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTT 93461 || || | || | ||| | ||||| ||||| | ||| || | || || ||||| | Sbjct 191615 TGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGT 191556 Query 93462 GAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | |||| || ||||||||||| || || ||||| |||||||||||||||| Sbjct 191555 TACAAAAGTTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCA 191496 Query 93522 ATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTT 93581 | | || ||| ||||| || |||| ||||| |||||||| | || || | Sbjct 191495 AAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGGTCCT 191436 Query 93582 TTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCC 93641 | | | ||||||||| || || |||||||| || || | ||||| ||||| | |||| Sbjct 191435 TCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCC 191376 Query 93642 ATATGTCTTGATATTGAATTGG 93663 | ||||| |||||||| || || Sbjct 191375 AAATGTCATGATATTGGATGGG 191354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854138552680