Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq956 127 2e-24 seq434 118 9e-22 >seq956 Length=3269709 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | || || ||||| | || ||||| || || | | Sbjct 2620661 ATGCAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCCTTCT 2620720 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | || || |||||||||||||||||||||||||| ||||| Sbjct 2620721 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 2620780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| ||||| ||||| |||||| || || | || || ||||| Sbjct 2620781 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 2620840 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 2620841 ATTCAGAAGGAGTCAACC 2620858 >seq434 Length=2816 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || ||||| || || || || |||| || || || ||| ||| Sbjct 2597 GATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAG 2656 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || |||||||| ||||||||||| |||||||| || || Sbjct 2657 CGACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCA 2716 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| | || || || || || ||||| || ||| ||| ||| | ||||| ||||| Sbjct 2717 GCAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAA 2776 Query 22398 CATTCAAAAAGAATCCAC 22415 |||||| || || || || Sbjct 2777 CATTCAGAAGGAGTCGAC 2794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||| || || |||||||| ||||| || ||||| ||||| || || || Sbjct 226 AAGATTCAAGACAAAGAAGGCATTCCACCGGATCAGCAGCGTCTGATATTCGCGGGAAAG 167 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||||| || || ||| ||| | ||||| ||||||||||| || || || || Sbjct 166 CAGTTGGAAGACGGCCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCGAC 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723104528705