Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq434 158 2e-33 seq956 116 7e-21 seq929 87.8 3e-12 >seq434 Length=2816 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || ||||| || ||||| Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| |||||||| || |||||||| || | || || || |||||| Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||| |||||||||||||| ||||| ||| ||| || | ||| | || || Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 ||||| || || || ||||| ||||| ||||| ||||| |||||||| || Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCATGAT 313 Score = 147 bits (162), Expect = 4e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||| || || ||||| || ||||| || || | |||||||| ||||| Sbjct 2801 GTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTG 2742 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 |||||| ||||| || | | ||| ||||| ||||||||||| |||||||| ||||| || Sbjct 2741 CTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTT 2682 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||| || ||| || ||||| ||| | ||| || |||| ||||| || || || | Sbjct 2681 CGCCTTCACATTCTCAATTGTGTC-GCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAG 2623 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 | | ||||| ||||| |||||||| Sbjct 2622 TCAAAGTCTTCACGAAGATCTGCAT 2598 >seq956 Length=3269709 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || || || || || || || Sbjct 2620887 CCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGAT 2620828 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | | || |||||| || |||||||| || || || || || | || || || |||||| Sbjct 2620827 AAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGA 2620768 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||||| || ||| || | || | | || || Sbjct 2620767 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACC 2620708 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || || || || || || || |||||||| Sbjct 2620707 TCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 >seq929 Length=940754 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 176241 GTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGT 176300 ||||||||||| | ||||| || ||| ||||| ||| || || | |||||| || Sbjct 242322 GTGAAGATATAACGGGCAGAAGCGGAGTCTTTGCCGCCGGAGAGACGCGTACCGAACTGA 242381 Query 176301 CCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACT 176360 || || | |||| ||||| ||| || ||||| || |||| ||||| | |||| Sbjct 242382 CCATAGGGCATCAGCAGATTGAGGTTGTTGGAACCTACAAAGTCCTGGGCTAGACCGATG 242441 Query 176361 ATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAG 176396 || | |||| ||||||| ||||||||||||| ||| Sbjct 242442 ATAGTGCCCATGAGAGACACCTCGCCGTGGTGGTAG 242477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611375092040