Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq956 84.2 2e-11 >seq956 Length=3269709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| ||||| || | || ||| Sbjct 2620878 AGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGC 2620819 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| |||||||| ||||| || || ||||||||||| || | | ||| Sbjct 2620818 CCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCC 2620759 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGACC 34086 ||||| ||| || ||| | | || || | ||||| || ||| || | Sbjct 2620758 TTGTCTTGAATCTTAGCCTTTA---CATTCTCAATAGAATCAGAAGGCTCGACCTCAAGG 2620702 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 2620701 GTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397057768887514