Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq907 147 5e-30 seq434 127 5e-24 >seq907 Length=590410 Score = 147 bits (162), Expect = 5e-30 Identities = 175/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| || || || |||| || || ||||| ||||| ||||||| Sbjct 17826 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17885 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || |||||||| || || |||||||| || || || ||| ||||| Sbjct 17886 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGA---TCTGGC 17942 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||||||||||||||| || || ||||| || | || Sbjct 17943 GGTATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCA 18002 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTT 288479 || || || || || || || || || || || || ||||| ||||||||| |||| Sbjct 18003 ACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTTGTT 18058 >seq434 Length=2816 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | || || || || || || ||||||| Sbjct 84 CCACCACGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 143 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| || || ||||| ||||| ||||||||||| ||| ||| Sbjct 144 AGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 203 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| || || || || || |||||||| ||||| || || || | || || Sbjct 204 ATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACC 263 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || | || || ||||| || || || ||||| ||||| |||||||| || Sbjct 264 TCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTGCATGAT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179639935593846