Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq907 105 7e-18 seq434 105 7e-18 seq953 86.0 6e-12 >seq907 Length=590410 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || || |||| ||||| || |||||||| ||||| || | Sbjct 17825 ACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17884 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| ||| | || || | ||||| || || | || ||||| ||||| || || || Sbjct 17885 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGG 17944 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 || |||||||| || || ||||| ||||| || ||| | | ||||| | || | Sbjct 17945 TATACCTTCTTTATCCTGAATTTTC-GCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 18003 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | |||| || || || || | |||||||||||||| |||||||| Sbjct 18004 CCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTT 18055 >seq434 Length=2816 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | ||||| || || ||||||||||| || | | ||| || | || Sbjct 2810 AAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 2751 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || || | || | || |||||||| || ||||| || || || || Sbjct 2750 TTCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 2691 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| ||| ||| | ||| || | || || || || | || | || Sbjct 2690 CTGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGT 2631 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||||||| || ||||| || ||||| Sbjct 2630 CTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | ||||| || || ||||||||||| || | | ||| || |||| Sbjct 98 AAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTC 157 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || || | || || |||||||| || || ||||| |||||||| || Sbjct 158 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 217 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | | |||| | || || || | ||| | || Sbjct 218 TTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 277 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| || ||||| Sbjct 278 CTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310 >seq953 Length=2188470 Score = 86.0 bits (94), Expect = 6e-12 Identities = 292/446 (65%), Gaps = 22/446 (5%) Strand=Plus/Minus Query 153696 tCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTCCAAGTG 153755 || || || || |||| |||| ||||||||| || ||||| | ||||||||||| | | Sbjct 253312 TCGGCAGCAGGCCTAGTGCGCAGATAATACATTCCCGTTTTGAGCCCACGTTTCCAGGCG 253253 Query 153756 TGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTAAACGAC 153815 | | |||| ||| || | | | || | |||||| | || ||| ||||| ||| Sbjct 253252 TAGAAATGCATGCTCGTGATTTTCCCGTAGTTGGGCTCCTTCATGTACAAGTTAAGAGAC 253193 Query 153816 TGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAG---TTTTTACTG 153872 ||||| || || ||||| | | ||||| || |||| |||| || ||||| ||| Sbjct 253192 TGGCTTTGGTCAATGAATGGAGCACGATCAGCTGCCA----AATCGAGTATTTTTTTCTG 253137 Query 153873 -CTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAATTTT 153931 | ||||| || |||||||||| ||||| | || || || || | ||||| | Sbjct 253136 AGGTAACTCCCAAACCGTTTTGTAGAGCGCTTTGAGATCCTCCGGAATTCCGTCAATATC 253077 Query 153932 CTGCACACTGCCTCCGGCCG-CTATAATGGAATTGCG-CATGTGGTCGTCGTACAAATTT 153989 || | || ||| | | || || || || | | ||| ||| || || | Sbjct 253076 TTG---AATGGATCC--CTGATTAGAAATGATCGCCGTCTTTAGGTGGTCCGACCAAAT- 253023 Query 153990 AGTCGACATAAATC--TTC---AACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCA 154044 | ||| | |||| || || || ||| ||||| | ||| || ||||| | || Sbjct 253022 -GCCGAGGTCAATCAGATCACGAAGCATGTGTGAGTTAACGATTTGGAAGTCGCCCGACA 252964 Query 154045 ATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATA 154104 || || || || ||| ||||||||| | || ||| ||| || |||| |||| | Sbjct 252963 GAACACGACGAGCAAACACATTGCTGGTCACTGGTTCGGTCGACTCTGTGTTACCTAGAA 252904 Query 154105 TTTGAGCTGTAGTTGCTGTGGGCATA 154130 | |||||||| | || ||||||||| Sbjct 252903 TCTGAGCTGTCGAGGCCGTGGGCATA 252878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499638822999080