Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq907 105 7e-18
seq434 105 7e-18
seq953 86.0 6e-12
>seq907
Length=590410
Score = 105 bits (116), Expect = 7e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| || || || |||| ||||| || |||||||| ||||| || |
Sbjct 17825 ACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGA 17884
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| ||| | || || | ||||| || || | || ||||| ||||| || || ||
Sbjct 17885 TAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGG 17944
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|| |||||||| || || ||||| ||||| || ||| | | ||||| | || |
Sbjct 17945 TATACCTTCTTTATCCTGAATTTTC-GCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 18003
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
| || | |||| || || || || | |||||||||||||| ||||||||
Sbjct 18004 CCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTT 18055
>seq434
Length=2816
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || || | ||||| || || ||||||||||| || | | ||| || | ||
Sbjct 2810 AAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 2751
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || | || |||||||| || ||||| || || || ||
Sbjct 2750 TTCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTC 2691
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| ||| ||| ||| | ||| || | || || || || | || | ||
Sbjct 2690 CTGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGT 2631
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||| |||||||| || ||||| || |||||
Sbjct 2630 CTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 2598
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || || | ||||| || || ||||||||||| || | | ||| || ||||
Sbjct 98 AAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTC 157
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || || |||||||| || || ||||| |||||||| ||
Sbjct 158 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 217
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
||| || || ||| || ||| | | |||| | || || || | ||| | ||
Sbjct 218 TTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 277
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || || | || || ||||| || |||||
Sbjct 278 CTTTCCAGTGAGTGTCTTCACGAAGATCTGCAT 310
>seq953
Length=2188470
Score = 86.0 bits (94), Expect = 6e-12
Identities = 292/446 (65%), Gaps = 22/446 (5%)
Strand=Plus/Minus
Query 153696 tCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCGGTTTTCAAACCACGTTTCCAAGTG 153755
|| || || || |||| |||| ||||||||| || ||||| | ||||||||||| | |
Sbjct 253312 TCGGCAGCAGGCCTAGTGCGCAGATAATACATTCCCGTTTTGAGCCCACGTTTCCAGGCG 253253
Query 153756 TGCATGTGCACGCTAGTTAATAACGCGAAACTGGGCTGCGCTATAAACACGTTAAACGAC 153815
| | |||| ||| || | | | || | |||||| | || ||| ||||| |||
Sbjct 253252 TAGAAATGCATGCTCGTGATTTTCCCGTAGTTGGGCTCCTTCATGTACAAGTTAAGAGAC 253193
Query 153816 TGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAG---TTTTTACTG 153872
||||| || || ||||| | | ||||| || |||| |||| || ||||| |||
Sbjct 253192 TGGCTTTGGTCAATGAATGGAGCACGATCAGCTGCCA----AATCGAGTATTTTTTTCTG 253137
Query 153873 -CTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGATCAATTTT 153931
| ||||| || |||||||||| ||||| | || || || || | ||||| |
Sbjct 253136 AGGTAACTCCCAAACCGTTTTGTAGAGCGCTTTGAGATCCTCCGGAATTCCGTCAATATC 253077
Query 153932 CTGCACACTGCCTCCGGCCG-CTATAATGGAATTGCG-CATGTGGTCGTCGTACAAATTT 153989
|| | || ||| | | || || || || | | ||| ||| || || |
Sbjct 253076 TTG---AATGGATCC--CTGATTAGAAATGATCGCCGTCTTTAGGTGGTCCGACCAAAT- 253023
Query 153990 AGTCGACATAAATC--TTC---AACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCA 154044
| ||| | |||| || || || ||| ||||| | ||| || ||||| | ||
Sbjct 253022 -GCCGAGGTCAATCAGATCACGAAGCATGTGTGAGTTAACGATTTGGAAGTCGCCCGACA 252964
Query 154045 ATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATA 154104
|| || || || ||| ||||||||| | || ||| ||| || |||| |||| |
Sbjct 252963 GAACACGACGAGCAAACACATTGCTGGTCACTGGTTCGGTCGACTCTGTGTTACCTAGAA 252904
Query 154105 TTTGAGCTGTAGTTGCTGTGGGCATA 154130
| |||||||| | || |||||||||
Sbjct 252903 TCTGAGCTGTCGAGGCCGTGGGCATA 252878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499638822999080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |