Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq907 102 8e-17 seq948 87.8 2e-12 seq956 84.2 2e-11 seq950 82.4 8e-11 >seq907 Length=590410 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||||||| | || ||| ||||| | ||| ||||| | Sbjct 17859 GACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCG 17918 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || || || || || || |||||||||||||| || ||| |||| | ||| | Sbjct 17919 AAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATC-CTGAATTTTCGCTTTCAC 17977 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | | ||| ||||| | || | ||||| ||||| || ||||| Sbjct 17978 GTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTT 18037 Query 138600 TACAAAAATCTGCAT 138614 ||| ||||||||||| Sbjct 18038 TACGAAAATCTGCAT 18052 >seq948 Length=1705571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 191768 GCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCT 191827 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||||| | || | | || | ||||| ||||| || ||||||||||||||| Sbjct 191828 TCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTG 191887 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || || || ||||| || ||||| |||||||| ||||| Sbjct 191888 ATCAGCCGGGATGAAGGCCTCCACACCGACTTTGCATGCCT 191928 >seq956 Length=3269709 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| ||||| |||||||| | | ||| ||||| | || || || | Sbjct 2620856 TTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAG 2620797 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | | || |||||||| || || || || ||||| || ||||| ||| | || | ||| Sbjct 2620796 CAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT-TGAATCTTAGCCTTT 2620738 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | | || | | ||| ||||| | || | ||||| ||||| |||||| Sbjct 2620737 ACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTT 2620678 Query 138598 TTTACAAAAATCTGCATG 138615 |||||||||||||||||| Sbjct 2620677 TTTACAAAAATCTGCATG 2620660 >seq950 Length=1857967 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 57307 ACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGCCG 57366 ||||| || | ||| || || || ||| | || || | ||||| || || | ||||| Sbjct 280995 ACGTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGCCG 280936 Query 57367 GTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 57426 ||| |||||||| | || || || |||||||| || | ||||| ||||| || ||| Sbjct 280935 TGGGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATGA 280876 Query 57427 ACGTGAAATCCGTGC 57441 |||||||| |||||| Sbjct 280875 ACGTGAAAGCCGTGC 280861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256463461040