Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq929 100 3e-16 seq948 82.4 9e-11 >seq929 Length=940754 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 176819 TTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACT 176878 || || || |||||||| ||||| ||| | ||||| |||||||| ||||||||| || Sbjct 244958 TTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCAACCACTCCGAGACCAGCCACG 245017 Query 176879 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT-TCCAGATTGTGC 176937 || || | || || ||||| || || || | |||||| || || | | | ||| | | Sbjct 245018 GCCAGAGATTTGGCTGAATCCCCTTCAGTGAGGATGAGGGTGCAGTGCTGCGAATTCTTC 245077 Query 176938 CGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACC 176976 |||||||| | ||| |||||||||||||| ||||| || Sbjct 245078 -GTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCCC 245115 >seq948 Length=1705571 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||| || || || ||| ||| | || || |||| || ||| Sbjct 191922 GCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCT 191863 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||| || || | | |||||| ||||| ||||| | Sbjct 191862 GGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACG 191803 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGC 127674 || || ||| ||||| || | ||| |||||||| Sbjct 191802 CCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGC 191768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613499860920120