Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq953 118 2e-21 seq948 118 2e-21 >seq953 Length=2188470 Score = 118 bits (130), Expect = 2e-21 Identities = 312/474 (66%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 203831 ACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAG 203890 |||| | |||||| || ||||||| ||||| || | |||||||| | | |||||| Sbjct 253345 ACCTCCTTCTTGTTGACGGTGAACTTAATGGGGTCGGCAGCAGGCCTAGTGCGCAGATAA 253286 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 ||||| || || || || || | ||| |||| | |||||| | | ||| | Sbjct 253285 TACATTCCCGTTTTGAGCCCACGTTTCCAGGCGTAGAAATGCATGCTCGTGATTTTCCCG 253226 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 |||||| || ||||| | ||| ||||||||||||||||| ||||| || || ||| Sbjct 253225 TAGTTGGGCTCCTTCATGTACAAGTTAAGAGACTGGCTTTGGTCAATGAATGGAGCACGA 253166 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || || |||| || || || | ||||| | | |||||| ||||| ||| | | || Sbjct 253165 TCAGCTGCCAAATCGAGTATTTTTTTCTGAGGTAACTCCCAAACCGTTTTGTAGAGCGCT 253106 Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129 || | | || | || | | || || || || || | | | || | Sbjct 253105 TTGAGATCCTCCGG-AATTCCGTCAATATCTTGAATGGATCCCTGATTAGAAATGATCGC 253047 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || | | ||| ||| ||||| | ||||| || || | || ||| | ||| Sbjct 253046 CGTCTTTAGGTGGTCCGACCAAATGCCGAGGTCAATCAGATCACGAAGCATGTGTGAGTT 252987 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | ||| || ||||| || ||||| || | || | |||| ||| |||| | |||||| Sbjct 252986 AACGATTTGGAAGTCGCCCGACAGAACACGACGAGCAAACACATTGCTGGTCACTGGTTC 252927 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 | || ||| |||| || | ||||||||| || |||||||||||| ||||| Sbjct 252926 GGTCGACTCTGTGTTACCTAGAATCTGAGCTGTCGAGGCCGTGGGCATAGGAGC 252873 >seq948 Length=1705571 Score = 118 bits (130), Expect = 2e-21 Identities = 343/525 (65%), Gaps = 5/525 (1%) Strand=Plus/Minus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||||| | ||||| ||||||||| ||| || || || ||||| ||| ||||||||| Sbjct 191937 TTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 191878 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| ||||||| || ||| ||||||||||| || | ||||| | | Sbjct 191877 CTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 191818 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| || | || || || || || || ||||| |||| ||| | | | || Sbjct 191817 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCC 191758 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG- 160149 || | | ||||||| ||||| || || ||||| || | || |||| ||| Sbjct 191757 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCA-GCGT 191699 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 || |||||||||||||| ||| | ||| |||||| || ||| ||||||| Sbjct 191698 CTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAG 191639 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 ||||||||||| | || | ||||||| ||| | || | ||| ||| | Sbjct 191638 AAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACG 191579 Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329 ||||| || || || || | || | | ||||| ||||||| | || Sbjct 191578 AGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGATTTTCATTAACGATGCC 191519 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || ||| ||||| |||||||| || | ||| |||||||| | ||| | | || || Sbjct 191518 ATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAG 191459 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 | |||||| | || | ||| | |||||||| || || || Sbjct 191458 GC---CTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTC 191417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145687955920