Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq434 136 9e-27 seq907 107 5e-18 seq956 91.5 3e-13 >seq434 Length=2816 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| |||||||||||||| || | ||||||||| | | || Sbjct 90 CGAAGACGAAGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTA 149 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||||||| ||||| || ||||||||||| ||||| ||| ||| Sbjct 150 CGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCT 209 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| ||||||| || | | ||| | | || || ||||| Sbjct 210 TCTTTGTCTTGAATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAA 269 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| || || || Sbjct 270 GTAATAGTCTTTCCAGTGAGTGTCTTCACGAAGATCTG 307 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| |||||||||||||| || | ||||||||| | | || | |||||| Sbjct 2809 AGCACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 2750 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || |||||||| | ||| |||||||| || ||| || || ||| Sbjct 2749 TCCAACTGCTTCCCCGCGAAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCC 2690 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || |||||| || | ||||| | | ||| || |||| |||||| ||| Sbjct 2689 TGAATTTTCGCCTTCACATTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTC 2630 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| ||||| || || || Sbjct 2629 TTGCCAGTCAAAGTCTTCACGAAGATCTG 2601 >seq907 Length=590410 Score = 107 bits (118), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| || |||||||| || |||||||||||||| | |||||||| | | || Sbjct 17831 TCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGT 17890 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || | ||||| || |||||||| || || ||||| || || || || Sbjct 17891 TCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACC 17950 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| |||||||| ||| || |||||| |||| || || ||| || || || | Sbjct 17951 TTCTTTATCCTGAAT-TTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAA 18009 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || || || ||||| || ||||| || |||||| Sbjct 18010 GTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTG---CATTTT 18055 >seq956 Length=3269709 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || |||||||| || | |||||||||| || | | Sbjct 2620881 CGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGAC 2620822 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || || || || ||||||||||| || || ||| || Sbjct 2620821 CGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCC 2620762 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | | || | | || || || | Sbjct 2620761 TCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGG 2620702 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||| |||||||| || Sbjct 2620701 GTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTG 2620664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178907144579119