Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq948 212 6e-50 seq434 93.3 4e-14 seq907 86.0 6e-12 >seq948 Length=1705571 Score = 212 bits (234), Expect = 6e-50 Identities = 418/606 (69%), Gaps = 17/606 (3%) Strand=Plus/Minus Query 132869 GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGG 132928 |||| || | ||| || || || | ||| ||||||||| || | ||| || |||| | Sbjct 191950 GTTG-ACAATATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGC 191892 Query 132929 AAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATA 132988 || | ||||||||||| || | ||| |||||||| ||||| || ||||||||||| | Sbjct 191891 TGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGA 191832 Query 132989 TGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 | | || || || |||||||| ||||| || || || ||||| ||||| || |||| Sbjct 191831 TAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCT 191772 Query 133049 CGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG- 133107 || || | | || | | | || ||||| | || ||||| ||||| |||||| | Sbjct 191771 CGGCGTATGGAGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGC--TTTCTTAGC 191714 Query 133108 -ACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GC 133164 || || |||| ||| | | |||||| |||||| ||| | | | ||| | Sbjct 191713 AACACATGGCAGCGTCTGAACGGCGTTAAACAAA--AAGTCGCGTTCCACTGGATCCTTA 191656 Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 | |||||| || || || || |||||||| || || | ||| || | ||||| ||| Sbjct 191655 ATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGC 191596 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCA 133282 | |||||||| || || |||||| | || ||||| | | ||| | || | | Sbjct 191595 ATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTA--CAAAAGTTCAAAGTTA 191538 Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342 ||||||| || |||||||| || ||||| || ||||| |||| || | ||||||| Sbjct 191537 GATTTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAAT 191478 Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC-GCGCGTGTCCTTGGACAGGTCCACCTCC 133401 | || ||| || || | || ||||| || | | | |||||| | || || || ||| Sbjct 191477 GACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAG-GTCCTTCGCCAAATCGACTTCC 191419 Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTG 133460 || || |||||||| || || | ||||| ||||| | ||| ||| ||||| |||||| Sbjct 191418 TCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTA-AAACTCCCAAATGTCATGATATTG 191360 Query 133461 TATGGG 133466 ||||| Sbjct 191359 GATGGG 191354 >seq434 Length=2816 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || || ||| | Sbjct 2598 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCAGC 2657 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||| | ||||| ||||| ||||| | ||||| Sbjct 2658 GACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACCAG 2717 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | |||||| || ||| |||| || | || ||||| |||||||||| Sbjct 2718 CAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACAAC 2777 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| |||| ||||| | ||||| ||| Sbjct 2778 ATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGT 2813 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || || || | || || ||| | | Sbjct 310 ATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 251 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || | || || | |||||||| || ||||| | || || Sbjct 250 GACTCGATAGAGAACG-TGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCA 192 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||| |||| |||| || ||||| ||||||||| Sbjct 191 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAA 132 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| ||||| | ||||| ||| Sbjct 131 CATTCAGAAGGAGTCGACTCTGCACCTTGTGCTTCGT 95 >seq907 Length=590410 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || |||||||| || ||||||||||| || || || ||||| || || | || || ||| Sbjct 18058 AACAAAATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAG 17999 Query 38298 GCCACCGA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 | | || || || | |||| | |||| ||||| | || ||||| || || || Sbjct 17998 CCAAGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAAGGTATACCG 17942 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | || || || ||||| || | ||| || || || | || || | ||| ||||| | Sbjct 17941 CCAGATCAGCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCC 17882 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| || |||||||| |||| || || Sbjct 17881 GACTACAATATTCAAAAGGAGTCGACACTTCA 17850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500166816682880