Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq897 179 1e-39 seq923 96.9 1e-14 seq956 87.8 7e-12 seq738 86.0 2e-11 >seq897 Length=494349 Score = 179 bits (198), Expect = 1e-39 Identities = 257/359 (72%), Gaps = 6/359 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || || || |||| |||||||||||| ||||||||| |||| || || Sbjct 162275 TTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCCGAGGCC 162334 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| || |||||| | || || | ||||| ||||| || |||||||| || Sbjct 162335 TATCTTGGCACTGAAGTTACCCACGCTGTCGTCACTGTGCCCGCCTACTTCAATGACGCT 162394 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||| || |||||||| || ||||||||| | | ||| | |||||||| Sbjct 162395 CAACGTCAAGCGACCAAAGATGCTGGTGCCATTGCTGGTCTGACTGTGTTGCGAATTATC 162454 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 |||||||| || || ||||| | || ||||| | ||| || |||||| || || Sbjct 162455 AATGAACCAACTGCCGCTGCGATTGCCTATGG-TTTGGATAA--AAAAGATAC---TGAG 162508 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || || || | ||||||||| ||||||| || || ||| || | || |||| Sbjct 162509 AAGAACATCCTCGTATTTGATCTTGGTGGTGGCACCTTCGATGTCTCCCTCCTGACAATC 162568 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || |||| || |||||||| || |||| |||||| |||||||| || |||||||| Sbjct 162569 GACAATGGTGTGTTTGAAGTTGTCGCGACCAGTGGTGACACTCATCTTGGTGGTGAAGA 162627 >seq923 Length=785151 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| || |||||||||||| | || ||||| || || |||||||| Sbjct 51732 GCGGTTATCACCGTTCCTGCCTATTTCAATGATTCCCAGCGGCAGGCTACCAAAGATGCT 51791 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || || || || | ||||||||||| | || ||||||||||| || || ||||| Sbjct 51792 GGTCAGATAGCCGGCCTGAATGTTCTTCGTGTCATCAATGAACCTACTGCCGCGGCTCTC 51851 Query 451442 GCATATGGACT 451452 || || || || Sbjct 51852 GCTTACGGTCT 51862 >seq956 Length=3269709 Score = 87.8 bits (96), Expect = 7e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || || || || |||||||||||||| |||| || || || || |||||||| Sbjct 249738 GATGCTGTCATAACAGTGCCCGCTTATTTCAACGATGGTCAGCGTCAGGCCACTAAAGAA 249797 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || | ||||||||| | || | |||||| || || ||||| || ||||| ||| Sbjct 249798 GCTGGTGAATATGCTGGTTTGACAGTGCATCGAATAATCAACGAACCCACCGCAGCCGCT 249857 Query 451439 CTAGCATATGG 451449 || || || || Sbjct 249858 CTCGCCTACGG 249868 >seq738 Length=84888 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| ||||| ||||||||||| || || || ||||| | | ||| | || || ||| Sbjct 7971 GTTACAGATGCGGTAATTACTGTGCCAGCGTACTTCAACGTGGGCCAAAGACAGGCCACT 8030 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 | ||| |||| | | || || || |||||||| || || | || ||||| || ||||| Sbjct 8031 ATAGACGCAGCAAAAATAGCCGGCTTAAATGTGCTGCGGCTCATCAATGAGCCAACAGCG 8090 Query 451433 GCTGCTCTAGCATATGG 451449 ||||| | ||||| || Sbjct 8091 GCTGCCATTGCATACGG 8107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975694174605356