Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq953 140 4e-28 seq948 116 5e-21 seq929 87.8 2e-12 >seq953 Length=2188470 Score = 140 bits (154), Expect = 4e-28 Identities = 420/643 (65%), Gaps = 13/643 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||| ||||| ||||| ||| | |||||||||||||| || ||| ||||| ||| | Sbjct 251349 CCCCAGTATATGTTTATGCGCGTCTCTATCGGTATCCATGGTGAGGATCTTGATGCTGCT 251408 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| | |||||| | ||| || || || |||| || || || Sbjct 251409 ATTGAGACGTACAATCTCATGTCCGGAAAGTGGTTGATTCATGCTTCACCCACTCTTTTT 251468 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || ||||| || || | || || |||||||| || || | || | | || || || Sbjct 251469 AATGCTGGGACGCCTATTCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGATGAC 251528 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || | ||||| || | ||| |||| ||||||| | |||||||| | |||||| Sbjct 251529 AGTATTGAGGGCATATATGACACGCTCAAACAATGTGCACTTATCTCAAAAAGTGCTGGT 251588 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || ||||| | | | ||| | || | || || || || || ||| Sbjct 251589 GGAATCGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGACTAAT 251648 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 || | || | ||| || | || |||||||| || || ||| || || || ||||| Sbjct 251649 GGCGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTATGTT 251708 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 | || | || ||| | | || | | || | ||||| || || ||||| Sbjct 251709 GATCAGGGGGGCAATAAGCGACCC---GGTGCCTTTGCCATTTATCTCGAACCGTGGCAT 251765 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 ||||| | || |||| | || || || ||| |||| ||||| || || Sbjct 251766 CCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCGCGCG 251825 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 || ||||||||| || || |||||||| ||||| ||||||||| | ||||| | || Sbjct 251826 CGAGATCTCTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAGCAGGT 251885 Query 112146 GGCAATTGGTCTCTCTTTTG-TCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| ||| | || | | | || || || || |||||||| | || ||| | Sbjct 251886 GGCCCATGGAC-CTTTATGGACCCCCACGAATGC-CCCGGTCTTGCTGACTTTTGGGGGG 251943 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 |||| |||||| | |||||||||||||||||| |||| |||| Sbjct 251944 AGGAATTTGAAACGCTCTACACAAAGTACGAGTTAGAAGGTCG 251986 >seq948 Length=1705571 Score = 116 bits (128), Expect = 5e-21 Identities = 174/243 (72%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 ||| | ||| | || || | |||||| || |||||||| ||||||||| | | |||| Sbjct 191684 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 191743 Query 102153 TTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 102209 ||| ||| ||| | | | | || ||||| || | ||||| || |||||| Sbjct 191744 ATTGCAAATAGGAAGGCTCCATAC---GCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAA 191800 Query 102210 GGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 || | ||||| |||||||| || ||| |||| | ||||||||||||||| |||||||| Sbjct 191801 GGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCAT 191859 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328 |||||| ||| |||| ||||||| | ||| || || || || |||||| || || Sbjct 191860 GCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTT 191919 Query 102329 TGC 102331 ||| Sbjct 191920 TGC 191922 >seq929 Length=940754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950 || ||||||||||| || || || |||||||| ||||| ||| | || || ||| Sbjct 244937 GCTTCACGAACATTGAGCAGTTTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCA 244996 Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010 ||||| |||||| || || || || | ||| || ||||| || || || | |||||| Sbjct 244997 ACCACTCCGAGACCAGCCACGGCCAGAGATTTGGCTGAATCCCCTTCAGTGAGGATGAGG 245056 Query 177011 GTACACT--TGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 177068 || || | ||| | ||| | ||| ||||| | ||| ||||| ||||| || ||||| | Sbjct 245057 GTGCAGTGCTGCGA-ATTCT-TCGTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCC 245114 Query 177069 C 177069 | Sbjct 245115 C 245115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620734974369040