Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq953 131 2e-25 seq929 96.9 4e-15 seq948 86.0 7e-12 >seq953 Length=2188470 Score = 131 bits (144), Expect = 2e-25 Identities = 410/629 (65%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 106746 |||||||||||||||||| | |||||| ||||| ||| ||| | ||||| || || Sbjct 251975 CTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGG-GC 251917 Query 106747 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 || || || | || | |||| | ||||| | ||||| ||||||||||| || | Sbjct 251916 ATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGAT 251857 Query 106806 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 106865 | |||||||| || | |||||||||| ||||| || ||| |||| ||| Sbjct 251856 CCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCT 251797 Query 106866 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 106925 ||||| || | |||| || | ||||| ||||| || || ||||| | || | | Sbjct 251796 TCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGG 251737 Query 106926 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 106982 || ||| | || | |||| ||||| || || || ||| || || |||| Sbjct 251736 CACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAA 251677 Query 106983 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 107042 |||| || | || ||| | || | ||||| ||||| || || || | Sbjct 251676 GCATCGGTACAAGACCGTTGGACTCGCCATTAGTCCCAGCGATGAAAGTGCCCTTACTCC 251617 Query 107043 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 107102 | | ||| | | | || || || ||||| | |||||||| | ||||| | Sbjct 251616 GGATACAATGAACATTGAGACCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTT 251557 Query 107103 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 107162 | || || |||| || || | || ||| || || | | | | ||||| |||| Sbjct 251556 TGAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGG 251497 Query 107163 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 107222 ||||||| || | || || |||||||| || || || |||| || ||||| ||| || Sbjct 251496 ACATCTGAGGAATAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAAC-CAC 251438 Query 107223 CTT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 || |||||| | ||| ||||| | ||| ||||| || || || ||||| ||| Sbjct 251437 TTTCCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATACCG 251378 Query 107282 ATGGCCACACGCATAAACATGTATTGGGG 107310 || | || ||||||||||| || ||||| Sbjct 251377 ATAGAGACGCGCATAAACATATACTGGGG 251349 >seq929 Length=940754 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| || || |||||| | ||||||||||| || |||||| || || Sbjct 244958 TTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCAACCACTCCGAGACCAGCCACG 245017 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 || || | ||| |||||||| || || |||| |||||||| || | || | | | Sbjct 245018 GCCAGAGATTTGGCTGAATCCCCTTCAGTGAGGATGAGGGTGCAGTGCTGCGAATTCTTC 245077 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 || ||||| | ||| || ||||||||||| ||||| || Sbjct 245078 GTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCCC 245115 >seq948 Length=1705571 Score = 86.0 bits (94), Expect = 7e-12 Identities = 193/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || |||||| || ||||| ||| || | || || |||| |||||| Sbjct 191922 GCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCT 191863 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | |||| | |||| ||| ||||| || || ||||| | Sbjct 191862 GGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCA-AATGAACCAGAAAAGAAAAC 191804 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCG-AAGGAGCGAGACTTTGTGTCAA 117451 || || ||| || || || | || ||||||||| | ||||| || | || ||| Sbjct 191803 GCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCCTTCCTATTTG-CAA 191745 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 ||| | | ||||| | || ||||| ||| |||||| | || || | ||| | || Sbjct 191744 TCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAA 191685 Query 117512 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCA 117556 | || | ||| | |||||||||||| | ||||||| Sbjct 191684 ACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCA 191640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973742354680