Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq907 168 1e-36 seq434 134 3e-26 seq956 129 1e-24 >seq907 Length=590410 Score = 168 bits (186), Expect = 1e-36 Identities = 172/223 (77%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||||||||| || ||||| |||||||||||||| |||| || |||| | Sbjct 17835 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17894 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||||| ||||||||||| ||||| || ||||| || || |||||| Sbjct 17895 CCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCT 17954 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 || || |||||||| || |||||||| |||| || |||| || || ||||| Sbjct 17955 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 18011 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | || ||||| || | ||||||||||| | ||||||| Sbjct 18012 GTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTT 18054 >seq434 Length=2816 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || ||||| ||||| |||| ||| || | || ||||| Sbjct 102 ACAAGGTGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCC 161 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || || || || || || || ||||||||||||||||||||| Sbjct 162 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGA 221 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| || | ||| | || || || | |||| |||||| Sbjct 222 ATCTTAGCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTT 281 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 282 CCAGTGAGTGTCTTCACGAAGATCTGCAT 310 >seq956 Length=3269709 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || ||||||||||| || | | | | |||||| || Sbjct 2620869 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCC 2620810 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || ||||| || || || ||||| ||||| || || ||||||||| Sbjct 2620809 AACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 2620750 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || ||| || || |||||||| | || || Sbjct 2620749 ATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTG 2620690 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||||||| || | ||||| Sbjct 2620689 CCAGTAAGAGTTTTTACAAAAATCTGCAT 2620661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109467996022019