Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq434 114 8e-21 seq956 95.1 8e-15 >seq434 Length=2816 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || | || |||| ||| ||||| || ||| Sbjct 120 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAAT 179 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | || || ||||| |||||| || ||| Sbjct 180 ATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTTC 239 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 ||||||| |||| | |||||| || | || || || ||||| ||||| |||||||| Sbjct 240 TCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACG 299 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 300 AAGATCTGCAT 310 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| |||| ||| || || || || Sbjct 2788 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCGAAG 2729 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | |||||||||||| | || | ||||||||||| ||| ||| || || || Sbjct 2728 ATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCAC--AT 2671 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | || | || ||||| || | || || || || || || | |||||||| Sbjct 2670 TCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTCA 2611 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 2610 CGAAGATCTGCAT 2598 >seq956 Length=3269709 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| || | | || |||| |||| ||| || || ||||| Sbjct 2620851 TCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAA 2620792 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| || || || Sbjct 2620791 ATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTAC--AT 2620734 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || || ||| | ||| || || | |||||||||||| || || ||||| || | Sbjct 2620733 TCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTA 2620674 Query 34969 CAAAGATCTGCAT 34981 |||| |||||||| Sbjct 2620673 CAAAAATCTGCAT 2620661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629813656296