Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq948 255 7e-63 >seq948 Length=1705571 Score = 255 bits (282), Expect = 7e-63 Identities = 521/766 (68%), Gaps = 10/766 (1%) Strand=Plus/Minus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 ||||| | ||| || ||||| | || ||| | ||| | ||||||||| || || Sbjct 192099 AGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATA 192040 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | || ||||||| ||| ||||| |||||||| ||| || | || ||||| ||| Sbjct 192039 AGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATA 191980 Query 18907 ATAG-ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || ||| |||||| ||| | |||| || | || ||||||||| || | ||||| Sbjct 191979 ATGTCATA-AACTCTTTCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCATGC 191921 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||| || || || || || || | || ||||| || || || || | || || Sbjct 191920 AAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGG 191861 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| || || | || || | ||| || |||||||||||||| ||||||||||| | || Sbjct 191860 CATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCC 191801 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || || || || ||||| | || | || ||| | |||| |||||| Sbjct 191800 TTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCCTTCCTATTTGCAATCCA 191741 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || |||||||| || ||||| |||||||||| |||| | | ||||| | Sbjct 191740 CCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAA 191681 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || ||| ||| |||| || | ||| |||| | | ||||||||| || Sbjct 191680 AAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGA 191621 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| || ||||| | || | || | ||||||||||| | || || | || || || Sbjct 191620 ATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGAC 191561 Query 19326 TTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||| ||||||| ||| | | |||||||||||| || |||||||| ||||||||| Sbjct 191560 TTCGTTACAAAA--GTTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCAAAA 191503 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAATGTATT-CCAATCAT 19441 || || || |||| || ||||| ||| | | | |||| | || ||||||| Sbjct 191502 AAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA--TTAAGGCCTTCCCAATCAG 191445 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | | || || | ||||| ||||| |||||||||||||| || || | ||||| || | Sbjct 191444 TGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGT 191385 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 | | | ||| || ||| ||||||| || || | | ||| ||||| Sbjct 191384 AAAACTCCCAAATGTCATGATATTGGATGGGCATCACAACGAATCT 191339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102075773480