Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq948 174 2e-38 >seq948 Length=1705571 Score = 174 bits (192), Expect = 2e-38 Identities = 465/703 (66%), Gaps = 16/703 (2%) Strand=Plus/Minus Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 || |||| ||| |||||||| |||||||| |||||||| | | || || ||||| Sbjct 192099 AGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATA 192040 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 || || || || | ||| ||| |||||| ||| || | || || || | | Sbjct 192039 AGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATA 191980 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA-AATAT-TTAAACAATAAA-CAT 37178 || | || |||| ||| | | || | || | ||||| || || ||||| ||| Sbjct 191979 ATGT---CATAAACTCTTTCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCAT 191923 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| || || | |||||||| | || ||||| || || ||||| | ||| Sbjct 191922 GCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCT 191863 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 ||||| | ||| | || || | |||||| || | ||||| || ||||||||||||| Sbjct 191862 GGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACG 191803 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 |||||||| || || ||||| || || || || | | | | || | |||| Sbjct 191802 CCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCCTTCCTATTTGCAATC 191743 Query 37359 CAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAG 37418 || | | |||||| || || ||||||| | || | || || || || Sbjct 191742 CACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAAC 191683 Query 37419 AGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | ||||| ||| |||| ||| | || || |||||||| || | | ||||||| Sbjct 191682 AAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTT 191625 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 | || || || ||||| | || | || | || |||||||| | ||| || | | || Sbjct 191624 CGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTT 191565 Query 37537 GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAA 37596 | || |||||| |||| || || || ||||||||||| || |||||||| ||||||| Sbjct 191564 GGACTTCGTTACAAAAGTTCAAAGTTAGATTTTCATTAACGATGCCATCACTGGCTGCAA 191505 Query 37597 AGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATCATTTGATAATTTTTTCCAAT 37653 | ||||| | |||||| ||| ||||| | || ||||||| | || ||||| Sbjct 191504 AAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT---AAGGCCTTCCCAAT 191448 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | | || || | ||||| ||||| ||||| |||||||| Sbjct 191447 CAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 191405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592309714410280