Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq956 125 6e-24 seq907 116 3e-21 seq434 96.9 3e-15 >seq956 Length=3269709 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || |||||||| || | | | | |||| ||||| ||| Sbjct 2620863 TGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGC 2620804 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | |||||| ||||| || ||||| || || || |||||||| || Sbjct 2620803 TTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTA 2620744 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || ||||| | || || ||||| || | |||||||| || Sbjct 2620743 GCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTA 2620684 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | |||||||||||| ||||||||| Sbjct 2620683 AGAGTTTTTACAAAAATCTGCATG 2620660 >seq907 Length=590410 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| || | || ||| | ||||| || || || ||||| |||||||| |||| Sbjct 17826 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17885 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| |||| || ||||||||||| || || || | || || ||||| ||||| Sbjct 17886 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGCGGT 17945 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| |||||||| ||| || | || | | ||| | || || Sbjct 17946 ATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACC 18005 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || || | |||||||| || |||||||| Sbjct 18006 TCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCAT 18052 >seq434 Length=2816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| |||| | || | | | || ||||| ||| Sbjct 108 TGCAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGC 167 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||||| |||||| ||||| || |||||||||||||| |||||||| || Sbjct 168 TTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTA 227 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | |||| | |||| | || || || | ||| | || || || || Sbjct 228 GCCTTCACGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTG 287 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTA 101474 | || || || || ||||||||| ||| Sbjct 288 AGTGTCTTCACGAAGATCTGCATGATTA 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396273778031649