Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq956 123 2e-23 seq434 89.7 4e-13 >seq956 Length=3269709 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATA--GACTTCGATCGTCGTCCAACTGCTTACCGGCA 48632 ||| || ||||||||||| ||||||| ||| || | || ||||||||||| || ||| Sbjct 2620852 CTCCTTCTGAATATTGTAGTCAGATAAGGAC--CGCCCATCCTCCAACTGCTTGCCAGCA 2620795 Query 48633 AATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACA 48692 || || || ||||| ||||| | |||| ||||||||||| |||||| |||||| Sbjct 2620794 AAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACA 2620735 Query 48693 GAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTT 48752 | | ||| || || | ||| ||||| | || || ||||| || || | ||||||| Sbjct 2620734 TTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTT 2620675 Query 48753 ACAAAAATCTGCAT 48766 |||||||||||||| Sbjct 2620674 ACAAAAATCTGCAT 2620661 >seq434 Length=2816 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || || | || |||| ||||||||||| || || || Sbjct 119 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAA 178 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||||| ||||| ||||||| |||| ||| || ||||| |||||| || || Sbjct 179 TATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTT 238 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||||| ||||| || ||||| || | || || || Sbjct 239 CTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCAC 298 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 299 GAAGATCTGCAT 310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933156958111