Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq948 113 8e-20 >seq948 Length=1705571 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| |||| | |||||| ||||||||||| | | ||||| |||| ||| Sbjct 191926 GCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAG 191867 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||||| || | || |||||||| || || | || || || ||||| ||||| Sbjct 191866 GCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAA 191807 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 | ||| || || || ||||| || |||| ||| || | | ||| ||| | | || Sbjct 191806 AACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTATGGAGCCTTCCTATTTGC 191747 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 ||||| ||| ||||| || || ||||| | ||||||| ||||| Sbjct 191746 AATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCT 191697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931521656538880