Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq953 102 2e-16 >seq953 Length=2188470 Score = 102 bits (112), Expect = 2e-16 Identities = 281/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || |||||| || ||||| ||||| || || | |||||||||| | || ||||| Sbjct 251870 CTTCATGAATAGATCCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTC 251811 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 | || |||| |||| | |||| ||||| | | || | |||||||| || || Sbjct 251810 GGCACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAG 251751 Query 222157 ATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG-AG 222215 ||| | ||| | || ||||||||||| ||||| ||||||| || ||| | ||| | Sbjct 251750 ATAAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGAT-CAACATACCGAGCAGTAC 251692 Query 222216 CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGA-TCGACCGTTGGTGCCCTTAATG 222274 |||||||| ||||| ||||||| || |||||||| ||| || || || || ||| Sbjct 251691 TGTTGAAGACCCGAAGCATCGGTACAAGACCGTTGGACTCG-CCATTAGTCCCAGCGATG 251633 Query 222275 TACGCACCGCCGGCCCTCAGGTTAC--TG-GCAGACATGCCGATACCACCGGCGTGTTTC 222331 | | ||| ||| || ||| || || | ||||| ||||| || ||| Sbjct 251632 AA---AGTGCCCTTACTCCGGATACAATGAACATTGAGACCGATTCCACCAGCACTTTTT 251576 Query 222332 GAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACG 222391 ||||| | || || ||||| ||||| |||||||| ||| ||| || || | Sbjct 251575 GAGATAAGTGCACATTGTTTGAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCATC 251516 Query 222392 TTCAGCAGAAAACAAGACGACATCTGA-GATTTGGTGGAACAGGCGTTAAACAGCGTGGG 222450 | |||| ||| || ||||||||| || | || | || || ||||| || ||||| Sbjct 251515 GTAAGCAAAAAGCAGCTGGACATCTGAGGAATAGGCGTCCCA-GCATTAAAAAGAGTGGG 251457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928833688694080