Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq953 127 2e-24 seq948 86.0 7e-12 >seq953 Length=2188470 Score = 127 bits (140), Expect = 2e-24 Identities = 410/631 (65%), Gaps = 13/631 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||||| ||||| ||||| ||| | ||||| ||||| || || || ||||| ||| Sbjct 251349 CCCCAGTATATGTTTATGCGCGTCTCTATCGGTATCCATGGTGAGGATCTTGATGCTGCT 251408 Query 75272 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| | |||||| || || ||| ||||| || |||| || || || Sbjct 251409 ATTGAGACGTACAATCTCATGTCCGGAAAGTG-GTTGATTCATGCTTCACCCACTCTTTT 251467 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 |||||||| || || | || ||||||||||| ||||| | | | | || || || Sbjct 251468 TAATGCTGGGACGCCTATTCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGATGA 251527 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || || |||| || || | | ||||| | |||||||| | ||||| Sbjct 251528 CAGTATTGAGGGCATATATGACACGCTCAAACAATGTGCACTTATCTCAAAAAGTGCTGG 251587 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 || || || | | | ||| | | | || || || ||||| || Sbjct 251588 TGGAATCGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGACTAA 251647 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| | || | ||| || | || |||||||| || || ||| || || || ||||| Sbjct 251648 TGGCGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTATGT 251707 Query 75571 AAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCA 75624 |||| | ||| ||| | | || || | || | || | ||||| ||||| Sbjct 251708 TGATCAGGGGGGCAATAAGCGACCC---GGTGCCTTTGCCATTTATCTCGAACCGTGGCA 251764 Query 75625 TGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 | | ||| | || |||| | || ||||| ||| |||| ||| || ||||| Sbjct 251765 TCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCGCGC 251824 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 |||||||||| | || |||||||| || || ||||||||||| ||||| | || Sbjct 251825 GCGAGATCTCTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAGCAGG 251884 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||| | |||| | || | || || || || || ||||| | ||| ||| | Sbjct 251885 TGGCCCATGGACCTTTATGGACCCCCACGAATGC-CCCGGTCTTGCTGACTTTTGGGGGG 251943 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 |||| |||||| | |||||||||||||| || Sbjct 251944 AGGAATTTGAAACGCTCTACACAAAGTACGA 251974 >seq948 Length=1705571 Score = 86.0 bits (94), Expect = 7e-12 Identities = 193/285 (68%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 64946 TGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAA 65005 ||||||| | |||||||||||| | ||| | || ||| | ||| | || | Sbjct 191640 TGATTGATACCTACATTAAGGATCCAGTGGAACGCGACTTTTTGTTTAACGCCGTTCAGA 191699 Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTC 65065 | | |||||| ||| ||||| || | ||||| | | ||| ||| || | || Sbjct 191700 CGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTG-CAAATAGGAAG 191758 Query 65066 GCTCCTT-CGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 ||||| | ||||||||| || | || || || ||| || || | ||||| || || Sbjct 191759 GCTCCATACGCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGT 191818 Query 65125 TCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 ||||| ||| |||| | |||| | |||||||| ||||||||||||||||| |||| Sbjct 191819 TCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAG 191877 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || | || ||| ||||| || |||||| || ||||| Sbjct 191878 CAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTTTGC 191922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596562463536160