Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq956 100 5e-16 seq907 87.8 3e-12 >seq956 Length=3269709 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || || ||||| || || | || ||||| || || ||||||||||| | | Sbjct 2620843 AATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACG 2620784 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || || || || ||||| || ||| |||||||| |||| Sbjct 2620783 CTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGA 2620724 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || || || || || |||||||| ||||| | ||||| | || ||||| Sbjct 2620723 ATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTTTTACAAAAATCTG 2620664 Query 172067 CAT 172069 ||| Sbjct 2620663 CAT 2620661 >seq907 Length=590410 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| |||| || || | || | || | ||| || |||||| || || Sbjct 17823 ATACCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCG 17882 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | ||| | || || ||||| |||||||| || || | | || || || || Sbjct 17883 GATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGCCGTTGCTGATCTGGC 17942 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||||||||| || ||||| ||| || || || | ||| | || Sbjct 17943 GGTATACCTTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCA 18002 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || || || || ||||| ||||| | ||||| | ||| ||||||||||| || Sbjct 18003 ACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTTACGAAAATCTGCATTTTGTT 18058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905125172310600