Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq957 111 5e-19 seq929 86.0 2e-11 >seq957 Length=3893204 Score = 111 bits (122), Expect = 5e-19 Identities = 216/313 (69%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 |||||| ||| |||| ||||||||| || ||||||||| | ||| || ||||| || Sbjct 334348 TTCCATGGCCTTCATTAGACGACGCTGGATGTAACCAGTTTCGGCTGTCTTGACAGCCGT 334407 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| | ||| ||||||||||||| || || ||||| | || ||| || || Sbjct 334408 ATCAATCAAACCCTCACGACCACCCATTGCGTGAAAGAAGAATTCAGTTGGTGTAAGACC 334467 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG-G 302749 | | ||||| |||| || ||||| | | ||||| || |||||| |||| Sbjct 334468 AGCTAGGTAGGAGTTCTCGACAAAACCTCTTGATTCGGGACCGTAATCGT----CTTGAA 334523 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 |||| || || || || | || | | | ||| |||| | || || || || || |||| Sbjct 334524 TAAAATGGGGAAGAGTGCGGTGCCTAAAACCGAATGGCACGCGTTTGCCTTCGACATTCT 334583 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA--AATCACTGCCCTTGGAGCCAGC 302867 ||||||| | || | || | ||| ||||| |||| | || ||||| ||||| || Sbjct 334584 GCTGTCCGACACAAGCGATAACCTGAGAAATGTTTATTCTTGAC--CCCTTTGAGCCCGC 334641 Query 302868 ATTTACCATAATA 302880 | ||||||||| Sbjct 334642 AACAACCATAATA 334654 >seq929 Length=940754 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 251829 CTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTC 251888 |||| |||| || | || ||||| ||||||||||| || || |||||||| || ||||| Sbjct 673269 CTCTATCAGGTGACCAATTGTCATTCGACTGGGAATGGCGTGAGGATTGATAATAATGTC 673328 Query 251889 GGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAG 251947 ||| | | || ||| ||||||||||||||||| | || || | | | || | Sbjct 673329 GGGAGTGATGCCCTCACAAGTGAAGGGCATATCCTCCT-GTCGGTAGAGGATGCCGCAGG 673387 Query 251948 TTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAA 251986 | || ||||| |||||||| || ||||| ||||||| Sbjct 673388 TACCTTTTTGACCGTGACGCGAGGCAAACTTGTCACCAA 673426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799553216509