Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq949 125 9e-23 seq948 113 6e-19 seq648 113 6e-19 seq923 86.0 8e-11 >seq949 Length=1851015 Score = 125 bits (138), Expect = 9e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 1592111 CGCACCGACGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCT 1592169 || || |||||||| || |||||| | |||||| | ||| ||||| ||| || || Sbjct 1473948 CGAACGGACGACATATCTAGCTGGGACCAAGAGTTTCTTCGA-GTCGATCAGGGAACTCT 1473890 Query 1592170 CTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTG 1592229 ||||| | || || || || ||||| |||||||||||| ||| || ||| | || Sbjct 1473889 GTTTGAACTCATTCTAGCAGCTAACTATCTCGACATCAAGGGTCTTCTTGATACGTGCTG 1473830 Query 1592230 CAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAA 1592289 ||||||||| || |||||||||||||| ||| | || || |||||||||||||| || || Sbjct 1473829 CAAGTCTGTTGCAAACATGATCAAGGGTAAGACACCGGAAGAGATCCGCAAGACTTTCAA 1473770 Query 1592290 CATCAA 1592295 ||||| Sbjct 1473769 TATCAA 1473764 >seq948 Length=1705571 Score = 113 bits (124), Expect = 6e-19 Identities = 197/282 (70%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||| || || ||||||| |||||||| |||| |||||| |||||||| ||||||||| Sbjct 191904 CCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTC 191845 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTG--CCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||||||||| | || || || || || || || | ||| || || || || | Sbjct 191844 TTGAGCCAAAAGAT--AGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGA 191787 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCATCGC 869355 | | | ||||||||||| || | || ||| |||| ||| |||||| | | || Sbjct 191786 ATGCCACTAGCCGCTCGGC----GTATGGA-GCCTTCCTATTTGCAATCCACCTAAGAGC 191732 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 ||| ||||| || || || | |||| ||| | | |||| ||| | ||| Sbjct 191731 CCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCG 191672 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 ||| | || ||||| | ||||| || ||||| || || || Sbjct 191671 TTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTA 191630 >seq648 Length=25196 Score = 113 bits (124), Expect = 6e-19 Identities = 136/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTC---GCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTG 1254424 ||| ||||| || ||||||||||| || |||| | ||| || ||| || | || Sbjct 18267 CAGACGCACAGCAGTCTGGATCTCTCTGCTCGTGATGGTCGACTT---CTTATTGTAATG 18323 Query 1254425 CGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1254484 ||||| || | | ||||| | | || || |||| |||||||| ||||| |||||||| Sbjct 18324 CGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACAAAGGAGTTCAT 18383 Query 1254485 GACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||| |||||||||| ||| ||||||||||| | ||||||||| Sbjct 18384 TATCGACATCGCCTTCGAGGAGATGCCCGTGTCTGGGTGCACCTGGCGCAACACCTTGTA 18443 Query 1254545 GATG 1254548 |||| Sbjct 18444 GATG 18447 >seq923 Length=785151 Score = 86.0 bits (94), Expect = 8e-11 Identities = 135/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 92600 CTCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCG-GAAAACATGTCGA 92658 ||||||||||||||| || || |||||| | || | || |||| ||||||| || | Sbjct 126793 CTCGGCGATCTGGCGTGTCAGCCGCTCCTGTA-CTTGCAGACGTCGTGAAAACACCTCCA 126851 Query 92659 CGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGG 92718 |||| | | ||||| |||| || || | | | || ||||||| |||||||| | Sbjct 126852 CGATCCTTGCAATCTTACTCAAACCAATCACCTTTCCATTGGGCAGATAGCCCAC-CGAT 126910 Query 92719 CCTTG-CCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGC 92777 || | ||||| || || | || |||||| || |||||||| || | |||| ||| ||| Sbjct 126911 ACTCGTCCCATGAATGGGATCATATGGTGTTCACACATGGAAAACATCTCGATGTCTCGC 126970 Query 92778 ACGATCAC 92785 || | ||| Sbjct 126971 ACCACCAC 126978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107060664098369