Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq434 113 4e-20 seq907 102 7e-17 seq948 86.0 6e-12 >seq434 Length=2816 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 ||||||||||||| | || || | || || || || || ||||| || || ||| ||| Sbjct 2596 CGATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACAATCACGCTGGAGGTTGAACCCA 2655 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||||| | || | || || || || || ||||| || || || || || || | Sbjct 2656 GCGACACAATTGAGAATGTGAAGGCGAAAATTCAGGACAAGGAGGGCATTCCACCAGACC 2715 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | |||||||||||||| || ||||| ||| |||| ||| | | | | || || || | Sbjct 2716 AGCAACGTTTGATCTTCGCGGGGAAGCAGTTGGAAGATGGCCGTACCCTTTCCGACTACA 2775 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||| ||||| ||||| || ||| | ||| Sbjct 2776 ACATTCAGAAGGAGTCGACTCTGCACCTTGTG 2807 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || |||||||| | || || || | | Sbjct 310 ATGCAGATCTTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 251 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||| | || || ||||| |||||||||||||| || || || ||||| Sbjct 250 GACTCGATAGAGAACGTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAG 191 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || ||| |||| || | | | | || || || ||| Sbjct 190 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAAC 131 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| ||||| || ||| | ||| Sbjct 130 ATTCAGAAGGAGTCGACTCTGCACCTTGTG 101 >seq907 Length=590410 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || |||||||| || || || || || | | Sbjct 18052 ATGCAGATTTTCGTAAAAACCCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17993 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || |||| ||| | ||| || || || |||||||| ||||| || ||||| Sbjct 17992 GATTCCATCGAGAACGTGAAAGCGAAA-ATTCAGGATAAAGAAGGTATACCGCCAGATCA 17934 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | ||||| || || || || | |||||| | ||| | | || || || || Sbjct 17933 GCAACGGCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17874 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| |||||||| ||| | || | || | || ||||| Sbjct 17873 TATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGG 17826 >seq948 Length=1705571 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 126031 GTCGCTTTCGCTATAGTGGAAGGCGTGTTTTTCTCGGGTAGTTTTGCGGCTAtttttttt 126090 || || |||||| || |||||||| || || || ||| ||||| |||| |||| Sbjct 191780 GTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGG 191839 Query 126091 ATAAAGACAAAGGGTATAATGCCCGGTCTAACGTTCAGCAACGAGTTGATTTCTCGTGAC 126150 | |||| ||| | ||||| || || || ||||||||||||||||| || || Sbjct 191840 CTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGAT 191899 Query 126151 GAAGGACTCCATACGGACTTTGCATGTCTGTATT 126184 ||||| ||||| || ||||||||||| || |||| Sbjct 191900 GAAGGCCTCCACACCGACTTTGCATGCCT-TATT 191932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892218099960