Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq648 138 2e-26 seq948 136 6e-26 seq881 111 2e-18 seq954 89.7 8e-12 seq949 89.7 8e-12 >seq648 Length=25196 Score = 138 bits (152), Expect = 2e-26 Identities = 183/250 (73%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||| || ||||| || ||||| || || |||||| | |||| || || Sbjct 18200 CGGTGTACTTGGTCACAGCCTTCGTGCCCTCCGACACCGCGTGCTTTGCCAACTCACCCG 18259 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CG-CTTGT 1485583 ||| | ||| ||||| || ||||||||||| | ||| ||||| || || ||| | Sbjct 18260 GCAGCAGCAGACGCACAGCAGTCTGGATCTCTC---TGC---TCGTGATGGTCGACTTCT 18313 Query 1485584 TAGTGC---GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 || || |||||| || | | ||||| | | || || |||| |||||||| |||| Sbjct 18314 TATTGTAATGCGCCAACCGACTCGACTCGGCGGCAATTCGCTCGAAGATGTCGTTCACAA 18373 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGA 1485700 | |||||||| |||||||||| || |||||||||| ||| ||||||||||| | Sbjct 18374 AGGAGTTCATTATCGACATCGCCTTCGAGGAGATGCCCGTGTCTGGGTGCACCTGGCGCA 18433 Query 1485701 GCACCTTGTA 1485710 ||||||||| Sbjct 18434 ACACCTTGTA 18443 >seq948 Length=1705571 Score = 136 bits (150), Expect = 6e-26 Identities = 231/330 (70%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || || |||||||| |||||||| ||| |||||| |||||||| ||||||||| Sbjct 191904 CCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTC 191845 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAA--AGATGCCCTCGACGGCGGCAA 794458 |||||||||||||| | | | || || | |||||| | | ||| || || || || | Sbjct 191844 TTGAGCCAAAAGATAGAA--GCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGA 191787 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGC--CCTCTTTGTTGATCCACTTCATCGC 794516 | | || ||||||||||| || | || | ||| |||| |||||| | | || Sbjct 191786 ATGCCACTAGCCGCTCGGC----GTATGGAGCCTTCCTATTTG-CAATCCACCTAAGAGC 191732 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| || || || || || | |||| ||| | | |||| ||| | ||| Sbjct 191731 CCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCG 191672 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 || || || ||||| | |||||| || || || || ||||| | || || |||||||| Sbjct 191671 TTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATGGATGTT 191612 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| ||||| || | || ||||| || Sbjct 191611 TTCGACGGCGACTTGCATCCCGTAAAAACA 191582 >seq881 Length=398024 Score = 111 bits (122), Expect = 2e-18 Identities = 158/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || |||||||||| |||||||| || ||||| || ||||||||| | || | || || Sbjct 380023 CGGTGTACTTGGTCACGGCCTTCGTGCCCTCCGACACGGCGTGCTTCGCTAACTCACCCG 380082 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CG-CTTGT 1485583 ||| | ||| ||||| || ||||| ||||| | ||| ||||| || || ||| | Sbjct 380083 GCAACAGCAGACGCACAGCAGTCTGAATCTCTC---TGC---TCGTGATGGTCGACTTCT 380136 Query 1485584 TAGTGC---GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAA 1485640 || || |||||| |||| | ||||| | || || || | |||||||| || | Sbjct 380137 TATTGTAATGCGCCAACCGGCTCGACTCGGCCGCAATTCGCTCAAAGATGTCGTTCACGA 380196 Query 1485641 ACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCC 1485678 | ||||||||||||||||| | ||| |||||||||| Sbjct 380197 AGGAGTTCATGATCGACATTGCTTTCGAGGAGATGCCC 380234 >seq954 Length=2959149 Score = 89.7 bits (98), Expect = 8e-12 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1485467 CGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGC 1485526 || ||||||| || || |||||||||||||| || || |||||| | |||| ||| || Sbjct 529536 CGGTGTACTTCGTCACTGCCTTGGTACCCTCGGACACCGCGTGCTTCGCCAATTCACCCG 529595 Query 1485527 GCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAG 1485586 | | | || || || ||||| || || || | | | ||| ||| | || ||| Sbjct 529596 GTAGCAGTAGCCGGACAGCGGTTTGAATTTCTCTGCTCGTGAT--TGTAG-ATTTCTTAT 529652 Query 1485587 TG---CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 || |||||||||| | || ||| | | | || || || | |||||||| || || | Sbjct 529653 TGTAATGCGCCAGGCGACTGGACTCAGCGGCAATACGTTCAAAGATGTCGTTAACGAAGG 529712 Query 1485644 AGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCA 1485703 ||||||| |||||||| | || ||| || ||| || || || ||||| | | Sbjct 529713 AGTTCATAATCGACATGGCCTTCGAGGAAATACCCGTATCCGGATGTACCTGACGCAAGA 529772 Query 1485704 CCTTGTAAA 1485712 ||||||||| Sbjct 529773 CCTTGTAAA 529781 >seq949 Length=1851015 Score = 89.7 bits (98), Expect = 8e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 2035572 CGCACCGACGACATTTCGCCGTGGGACAAGGCCTTT-TGCGAGGTCGACCAACCCACCCT 2035630 || || |||||||| || |||||| | | ||| | |||| |||| || || || Sbjct 1473948 CGAACGGACGACATATCTAGCTGGGACCAAGAGTTTCTTCGAG-TCGATCAGGGAACTCT 1473890 Query 2035631 CTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTG 2035690 ||||| | || || || || ||||| |||||||||||| || || ||| | | || Sbjct 1473889 GTTTGAACTCATTCTAGCAGCTAACTATCTCGACATCAAGGGTCTTCTTGATACGTGCTG 1473830 Query 2035691 CAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAA 2035750 |||| | || || ||| | |||||||| ||| | || || || ||||||||||| || || Sbjct 1473829 CAAGTCTGTTGCAAACATGATCAAGGGTAAGACACCGGAAGAGATCCGCAAGACTTTCAA 1473770 Query 2035751 CATCAA 2035756 ||||| Sbjct 1473769 TATCAA 1473764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916144599545123