Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq434 118 7e-22 seq956 116 2e-21 >seq434 Length=2816 Score = 118 bits (130), Expect = 7e-22 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| | || | || |||| |||||||| ||||| Sbjct 119 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAA 178 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| || | || | || || ||||| | || || || ||| Sbjct 179 TATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTT 238 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 ||||||| ||| | | ||| || || | || || |||||||| ||||| ||||| || Sbjct 239 CTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCAC 298 Query 34966 AAAGATCTGCATGAT 34980 |||||||||||||| Sbjct 299 GAAGATCTGCATGAT 313 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| | || |||| |||| ||||| || ||||| Sbjct 2789 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCGAA 2730 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| |||||||||||| | || | ||||||||||| | ||||| || || | Sbjct 2729 GATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCAC--A 2672 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || | || ||| || || || | || || ||||| || || | ||||| Sbjct 2671 TTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTC 2612 Query 34964 ACAAAGATCTGCAT 34977 || ||||||||||| Sbjct 2611 ACGAAGATCTGCAT 2598 >seq956 Length=3269709 Score = 116 bits (128), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||| || ||||| |||| | ||| |||| Sbjct 2620872 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 2620813 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || || || || || ||||| ||| | || | ||||||||||| Sbjct 2620812 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 2620753 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || || ||| | |||||| |||| |||||||| Sbjct 2620752 TGAATCTTAGCCTTTAC--ATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGG 2620695 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || || || |||||||| ||||||||| Sbjct 2620694 TTTTGCCAGTAAGAGTTTTTACAAAAATCTGCATG 2620660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689001302383