Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01-
28] 957 sequences; 110,837,706 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq434 118 7e-22
seq956 116 2e-21
>seq434
Length=2816
Score = 118 bits (130), Expect = 7e-22
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| || ||| | || | || |||| |||||||| |||||
Sbjct 119 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCCGCGAA 178
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| || ||||| || | || | || || ||||| | || || || |||
Sbjct 179 TATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTCACGTT 238
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
||||||| ||| | | ||| || || | || || |||||||| ||||| ||||| ||
Sbjct 239 CTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCAC 298
Query 34966 AAAGATCTGCATGAT 34980
||||||||||||||
Sbjct 299 GAAGATCTGCATGAT 313
Score = 105 bits (116), Expect = 4e-18
Identities = 141/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| || ||| | || |||| |||| ||||| || |||||
Sbjct 2789 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCGAA 2730
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||||| |||||||||||| | || | ||||||||||| | ||||| || || |
Sbjct 2729 GATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCAC--A 2672
Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| || || | || ||| || || || | || || ||||| || || | |||||
Sbjct 2671 TTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTC 2612
Query 34964 ACAAAGATCTGCAT 34977
|| |||||||||||
Sbjct 2611 ACGAAGATCTGCAT 2598
>seq956
Length=3269709
Score = 116 bits (128), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| ||| |||||||||||| || ||||| |||| | ||| ||||
Sbjct 2620872 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 2620813
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || || || || || || ||||| ||| | || | |||||||||||
Sbjct 2620812 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 2620753
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| || || || || || || || || ||| | |||||| |||| ||||||||
Sbjct 2620752 TGAATCTTAGCCTTTAC--ATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGG 2620695
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978
| || || || || || |||||||| |||||||||
Sbjct 2620694 TTTTGCCAGTAAGAGTTTTTACAAAAATCTGCATG 2620660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325689001302383
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |