Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq434 107 5e-18 seq907 87.8 4e-12 seq956 84.2 5e-11 >seq434 Length=2816 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || || |||||||| || || | |||| | | || Sbjct 295 AAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGTGACTCGATAGAGAAC 236 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| |||||||| ||| ||||| || | || || ||| Sbjct 235 GTGAAGGCTAAGATTCAAGACAAAGAAGGCATTCCACCGGATCAGCAGCGTCTGATATTC 176 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||||||||||| || | || | |||| |||||| | ||||| ||||| Sbjct 175 GCGGGAAAGCAGTTGGAAGACGGCCGTACCCTTTCCGACTACAACATTCAGAAGGAGTCG 116 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 115 ACTCTGCACCTTGT 102 >seq907 Length=590410 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| ||||| || |||||||| || ||| || ||| | ||||||||||| Sbjct 17974 AAAGCGAAA-ATTCAGGATAAAGAAGGTATACCGCCAGATCAGCAACGGCTTATCTTCGC 17916 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || ||||| || || ||||| | || | |||| ||||| | || || ||||| || Sbjct 17915 TGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAATATTCAAAAGGAGTCGAC 17856 Query 206367 TCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||| | ||||| ||| Sbjct 17855 ACTTCACCTTGTTCTAAGACTACGA 17831 >seq956 Length=3269709 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || | || || || |||||| Sbjct 2620664 CAGATTTTTGTAAAAACTCTTACTGGCAAAACCATAACCCTTGAGGTCGAGCCTTCTGAT 2620723 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || |||||| ||||||||||| || || || ||| || || || Sbjct 2620724 TCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAG 2620783 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||| || || || ||||||||||| ||||| || | || | || ||||| | Sbjct 2620784 CGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAATATT 2620843 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||||||||| Sbjct 2620844 CAGAAGGAGTCAACCCTTCACCTTGT 2620869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181806309030397