Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq907 111 1e-19 seq956 86.0 6e-12 seq948 84.2 2e-11 seq434 84.2 2e-11 >seq907 Length=590410 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| ||||||||| | ||| ||| ||| || | || ||||| | Sbjct 17859 GACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCG 17918 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || |||||||| ||||| ||||||||||| |||||| ||||| Sbjct 17919 AAGATAAGCCGTTGCTGATCTGGCGGTATACCTTCTTTATCCTGAATTTTCGCTTTCACG 17978 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||||| ||||| || |||||| Sbjct 17979 TTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGGGTTTTT 18038 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 18039 ACGAAAATCTGCAT 18052 >seq956 Length=3269709 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || ||||| |||||||| | || ||| ||| || | ||| || || | Sbjct 2620856 TTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAG 2620797 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || |||||||| |||||||| || || || || || || ||| || || | Sbjct 2620796 CAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTA 2620737 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || ||| | ||||| || || | || | ||||| ||||| ||||||| Sbjct 2620736 CATTCTCAATAGAATCAGAAGGCTCGACCTCAAGGGTTATGGTTTTGCCAGTAAGAGTTT 2620677 Query 132108 TTATGAAAATCTGCATG 132124 ||| |||||||||||| Sbjct 2620676 TTACAAAAATCTGCATG 2620660 >seq948 Length=1705571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 46824 GCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCC 46883 |||||||| | ||||||||||| || |||||||| || ||||| || ||||| Sbjct 191768 GCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCT 191827 Query 46884 GCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTG 46943 | || |||| | || | || | ||||| ||||| || ||||| ||||||||| Sbjct 191828 TCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCACCTTCAGCAACGAGTTG 191887 Query 46944 ATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATT 46989 ||| || || ||||| || ||||| |||||||| || || |||| Sbjct 191888 ATCAGCCGGGATGAAGGCCTCCACACCGACTTTGCATGCCT-TATT 191932 >seq434 Length=2816 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||| | |||||| |||||| | ||| || || | Sbjct 2791 GACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCCAACTGCTTCCCCGCG 2732 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| || || ||||| || ||||| || || || |||||| |||| Sbjct 2731 AAGATCAAACGTTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATTTTCGCCTTCACA 2672 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || || || || | ||| | || || ||||||| ||| || Sbjct 2671 TTCTCAATTGTGTCGCTGGGTTCAACCTCCAGCGTGATTGTCTTGCCAGTCAAAGTCTTC 2612 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 2611 ACGAAGATCTGCAT 2598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG-TTTACCG-G 131987 ||||| || ||||||||||||||| | |||||| ||||| | ||| ||| ||| | Sbjct 117 GACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCGTCTTCCAACTGCTTTCCCGCG 176 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 ||| || |||||||| ||||| || || ||||||||||| || ||| || |||| Sbjct 177 AAT--ATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGAATCTTAGCCTTCA 234 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | | || | ||||| || || | || | || || ||||| || || | Sbjct 235 CGTTCTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCT 294 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| |||||||||| Sbjct 295 TCACGAAGATCTGCATGA 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476605498538520