Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq948 178 2e-38 seq648 107 3e-17 seq953 89.7 7e-12 seq923 86.0 9e-11 >seq948 Length=1705571 Score = 178 bits (196), Expect = 2e-38 Identities = 291/412 (71%), Gaps = 12/412 (3%) Strand=Plus/Plus Query 1455905 CTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAG 1455964 ||||||| || ||||| ||||||||||| || || || | |||| || | Sbjct 191499 CTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAAAATCTAACTTTGAACTTTTGTAACG 191558 Query 1455965 AGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCC 1456024 | |||||| | || ||||| |||| ||||||||| | || ||||| |||||||||||| Sbjct 191559 AAGTCCAAATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATCC 191618 Query 1456025 ACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACC 1456084 | || |||| ||||| || ||||| || |||||| | ||||| || || || ||| Sbjct 191619 ATTCCGAAATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGACT 191678 Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 | ||| |||| | | ||| |||| | || || || ||||| ||||| | | Sbjct 191679 TTTTGTTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTA 191738 Query 1456145 AGTGGAT--CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC- 1456201 |||||| ||| |||| || ||| | || ||||||||||| || | || || || Sbjct 191739 GGTGGATTGCAAATAGGAAGG-CTCCATAC---GCCGAGCGGCTAGTGGCATTCGCTGCT 191794 Query 1456202 GTCGAGGGCATCT--TTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCG 1456259 || || ||| | | |||||| | || || || | |||||||||||||||||||||| Sbjct 191795 GTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCT--TCTATCTTTTGGCTCAAGAAGCGCG 191852 Query 1456260 GCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 | |||||||| || | || ||| |||||||| || ||||| || || |||| Sbjct 191853 GTCTCATGCCAGG-CCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAG 191903 >seq648 Length=25196 Score = 107 bits (118), Expect = 3e-17 Identities = 165/233 (71%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||| || || |||| ||| ||| | Sbjct 18446 ATCTACAAGGTGTTGCGCCAGGTGCACCCAGACAC-----GGGCATC-TCCTCGAAGGCG 18393 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 |||||||| |||||||| ||||| |||||||| |||| || || | | ||||| | || Sbjct 18392 ATGTCGATAATGAACTCCTTTGTGAACGACATCTTCGAGCGAATTGCCGCCGAGTCGAGT 18333 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGC---GAGATCCAGACCGCC 725087 || |||||| | ||| ||| || ||| | |||| || ||||||||||| || Sbjct 18332 CGGTTGGCGCATTACAATAAG---AAGTCGACCATCACGAGCAGAGAGATCCAGACTGCT 18276 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| ||| | ||| || || |||| | |||||| || || |||||||| Sbjct 18275 GTGCGTCTGCTGCTGCCGGGTGAGTTGGCAAAGCACGCGGTGTCGGAGGGCAC 18223 >seq953 Length=2188470 Score = 89.7 bits (98), Expect = 7e-12 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 263173 GATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATG 263232 |||||||| || |||| ||| || || |||||| | || | | | ||| || Sbjct 253098 GATCTCAAAGCGCTCTACAAAACGGTTTGGGAGTTACCTCAGAAAAAAATACTCGATTTG 253157 Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || || || || || || | | ||||| |||||||| || ||| ||||| | || Sbjct 253158 GCAGCTGATCGTGCTCCATTCATTGACCAAAGCCAGTCTCTTAACTTGTACATGAAGGAG 253217 Query 263293 CCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACT 263352 || | || || |||||| ||||| ||| || ||| || || ||||| || Sbjct 253218 CCCAACTACGGGAAAATCACGAGCATGCATTTCTACGCCTGGAAACGTGGGCTCAAAACG 253277 Query 263353 GGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTC 263406 || ||||| ||||||||||| |||| |||||| || ||||| | ||||||||| Sbjct 253278 GGAATGTATTATCTGCGCACTAGGCCTGCTGCCGACCCCATTAAGTTCACCGTC 253331 >seq923 Length=785151 Score = 86.0 bits (94), Expect = 9e-11 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 2133572 GGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGG-CA 2133630 |||||| || || || | || |||||||| || ||||| || | || || || || | Sbjct 126973 GGTGCGAGACATCGAGATGTTTTCCATGTGTGAACACCATATGATCCCATTCATGGGACG 126914 Query 2133631 AGGCCCACGTGGGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCA 2133690 || | |||||||| |||||| || ||| | || ||| |||| ||||| | | | Sbjct 126913 AGTATCG-GTGGGCTATCTGCCCAATGGAAAGGTGATTGGTTTGAGTAAGATTGCAAGGA 126855 Query 2133691 TCGTCGACATGTTTTC-CGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGCC 2133749 |||| || ||||||| |||| || | ||||||||||| || || |||||||||||| Sbjct 126854 TCGTGGAGGTGTTTTCACGACGTCTGC-AAGTACAGGAGCGGCTGACACGCCAGATCGCC 126796 Query 2133750 GAG 2133752 ||| Sbjct 126795 GAG 126793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177718895591034