Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq953 232 9e-56 seq948 221 2e-52 >seq953 Length=2188470 Score = 232 bits (256), Expect = 9e-56 Identities = 434/631 (69%), Gaps = 10/631 (2%) Strand=Plus/Minus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || || | ||| || ||| ||| ||||| || ||||||| ||| | | || || ||| Sbjct 251974 TCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGGGCAT 251915 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 || | || ||| || | ||| || | | | ||| || ||||| |||||||| Sbjct 251914 TCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCC 251855 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 ||||||||||| || | |||||||||| | | | ||| || || || || || Sbjct 251854 GGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCTTC 251795 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 | || | ||||| || | ||| | |||||| ||||| ||||| || || | | | Sbjct 251794 CGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCA 251735 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || ||||| ||||| || |||||||| | || | ||||| | || |||| | ||| Sbjct 251734 CCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGC 251675 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGC-G 69854 ||||| | || ||| || || | ||||| || |||| || || | || ||| | | | Sbjct 251674 ATCGGTACAAGACCGTTGGACTCGCCATTAGTCCCAGCGATGAAAGTGCC-CTTACTCCG 251616 Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 ||| | || | ||||| ||||| || || |||| ||||| || ||||| |||| Sbjct 251615 GATACAATGAACATTGAGACCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTT 251556 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 | ||||||||||| ||||| || || |||||| |||| |||| | ||| ||||| || Sbjct 251555 GAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGA 251496 Query 69975 CATTTGATGATGTATA---GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 ||| ||| || ||| || || |||||||| | || || || || ||| | ||||| Sbjct 251495 CATCTGAGGA---ATAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAACCA 251439 Query 70032 TTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTC 70090 ||| | || | |||||||| || |||||||| | || | |||| ||| ||| || | Sbjct 251438 CTTTCCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCAC-CATGGATAC 251380 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGG 70121 | || | ||| ||||| ||||||| ||| || Sbjct 251379 CGATAGAGACGCGCATAAACATATACTGGGG 251349 >seq948 Length=1705571 Score = 221 bits (244), Expect = 2e-52 Identities = 420/612 (69%), Gaps = 21/612 (3%) Strand=Plus/Minus Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 ||||||||| || | ||| || ||||| || ||||| ||||| | || || || || Sbjct 191941 ATGTTTAAAAATAAGGCATGCAAAGTCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 191882 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 ||| || ||||| || ||||| ||||| ||||| ||||||||||| || | |||||| Sbjct 191881 GTTGCTGAAGGTGAGGCCTGGCATGAGACCGCGCTTCTTGAGCCAAAAGATAGAAGCAAA 191822 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || ||||||||||| | |||||| || || || ||||| || || | ||| |||| Sbjct 191821 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCGGCGTA--- 191765 Query 39781 TGTATCAT---TATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGG 39834 || | | | ||| | |||||| | | |||||||| |||||||| ||||| || Sbjct 191764 TGGAGCCTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGG 191705 Query 39835 CATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTA 39892 || || | | || ||||| | | | | ||| |||| ||| |||| || ||| Sbjct 191704 CAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTA 191647 Query 39893 TCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAA 39952 || || | ||| |||||||| |||||||||||||| | || | || | |||||| Sbjct 191646 TCAATCAGAAGAGAGTACATTTCGGAATGGATGTTTTCGACGGCGACTTGCATCCCGTAA 191587 Query 39953 AAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTC 40012 ||||| | || || | |||||| || || |||||| | | | ||||||||| Sbjct 191586 AAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGATTTTCATTA 191527 Query 40013 ACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCA 40069 || || |||||||| || |||||||| ||||| |||| || |||| || || Sbjct 191526 ACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCA 191467 Query 40070 TCGGGTGTCAATTTATT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 40128 || | || || ||| ||| ||| || || | | ||| ||||| ||| |||| Sbjct 191466 TC----ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGT 191411 Query 40129 CCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAA 40188 |||||| || || | || || ||||| | | ||| || ||| ||||||| || || | Sbjct 191410 CCAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAAATGTCATGATATTGGATGGGCAT 191351 Query 40189 AATAACAAATCT 40200 | ||| ||||| Sbjct 191350 CACAACGAATCT 191339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900582853480