Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq948 208 6e-49 >seq948 Length=1705571 Score = 208 bits (230), Expect = 6e-49 Identities = 411/596 (69%), Gaps = 19/596 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || || ||| | || || |||||||||||||| ||| | | ||||| ||||| Sbjct 191339 AGATTCGTTGTGATGCCCATCCAATATCATGACATTTGGGAGTTTTACAAGAAAGCTGTT 191398 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGC 43815 || || |||||||||| || ||||| |||||| | || ||| | | ||| ||| || Sbjct 191399 GCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGC 191458 Query 43816 ATTAA-AACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | ||| ||||| ||||||| |||||||| |||||||| || || | Sbjct 191459 CTTAATGATGGC--GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTG 191516 Query 43875 ACGGGATAGTCAATGAAAAT-TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 | || || || ||||||||| | || | |||| | ||||| ||| | || || Sbjct 191517 ATGGCATCGTTAATGAAAATCTAACTTTGAACTTTTG-TAACGAAGTCCAAATTCCCGAG 191575 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || |||||||| ||| | ||| | ||| | ||||| || ||||| ||||||||| | Sbjct 191576 GCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATCCATTCCGAAATGTACTCT 191635 Query 43994 CTTCTGATAGATACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGC 44049 |||||||| ||||| ||||| || ||| || ||| || | | |||||||| || Sbjct 191636 CTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGA--CTT--TTTGTTTAACGC 191691 Query 44050 GATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AA 44105 | | || | || || | || | ||||| || ||||| |||| ||||| || Sbjct 191692 CGTTCAGACGCTGCCATGTG-TTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAA 191750 Query 44106 ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 || || | | | | | || || || || || || || | ||| |||||| |||||| Sbjct 191751 ATAGGAAGGCTCCATACGCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCT 191810 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 |||| || || ||||| | || |||||| | ||||| || ||| | ||||| || | | Sbjct 191811 TTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCATGCCAGGCCTCA 191870 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | || || ||||| || || || ||||||||| | || ||| ||||| ||| Sbjct 191871 CCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTTTGCATGC 191926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451364296785