Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq953 136 5e-27 seq929 82.4 1e-10 >seq953 Length=2188470 Score = 136 bits (150), Expect = 5e-27 Identities = 411/629 (65%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||||||||||||||| | |||||| ||||| ||| ||| | ||||| || || Sbjct 251975 CTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAAAGTCAGCAAGACCGGG-GC 251917 Query 111520 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 || || || | || | |||| | |||||| | ||||| ||||||||||| || | Sbjct 251916 ATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGAT 251857 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 | |||||||| || | |||||||||| ||||| || ||| |||| ||| Sbjct 251856 CCGGAATCCAAAGTGCAAGGAAGAGATCTCGCGCGCGAGCTTCCTCGGCACCAGTGTTCT 251797 Query 111639 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 ||||| || | |||| || | ||||| ||||| || || ||||| | || | | Sbjct 251796 TCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGG 251737 Query 111699 ATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAA 111755 || ||| | || | |||| ||||| || || || ||| || || |||| Sbjct 251736 CACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAA 251677 Query 111756 GCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTC 111815 |||| || | || ||| | || | ||||| ||||| || || || | Sbjct 251676 GCATCGGTACAAGACCGTTGGACTCGCCATTAGTCCCAGCGATGAAAGTGCCCTTACTCC 251617 Query 111816 TCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCG 111875 | | ||| | | | || || || ||||| | |||||||| | ||||| | Sbjct 251616 GGATACAATGAACATTGAGACCGATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTT 251557 Query 111876 TAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGG 111935 | || || |||| || || | || ||| || || | | | | ||||| |||| Sbjct 251556 TGAGCGTGTCATATATGCCCTCAATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGG 251497 Query 111936 ACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATAC 111995 ||||||| || | || || |||||||| || || || |||| || ||||| ||| || Sbjct 251496 ACATCTGAGGAATAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAATCAAC-CAC 251438 Query 111996 CTT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 || |||||| | ||| ||||| | ||| ||||| || || || ||||| ||| Sbjct 251437 TTTCCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATACCG 251378 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGG 112083 || | ||| ||||| ||||| ||||| || Sbjct 251377 ATAGAGACGCGCATAAACATATACTGGGG 251349 >seq929 Length=940754 Score = 82.4 bits (90), Expect = 1e-10 Identities = 250/373 (67%), Gaps = 34/373 (9%) Strand=Plus/Plus Query 181626 CCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAAG 181685 || || || |||||||||| |||||| | ||| ||||| || | |||||| || | Sbjct 242169 CCTGTGCCAATACCCTCGGCTCCATTGATGAGGACCATGGGGATGACTGGCATATACCAC 242228 Query 181686 TCTGGTTCAATGGAGCGTCC-ATCATCGTCCAA---GTAGTTGAGGATCGG---GTCATC 181738 | || ||||| | || || ||| || || |||||| | || || ||||| Sbjct 242229 GCGGGCTCAAT----CTTCTGATTATCCTCAAATAAGTAGTTTAAAATGGGATCGTCATT 242284 Query 181739 C-CGAGGATCAAAGATCTTGCGAGCCTCCTTGG--TAAGTTTTGTGAAGATATACCTCGT 181795 | || | |||||||||||||| | || | || ||||||||||| | | Sbjct 242285 CTCGTG----AAAGATCTTGCGAG--TTAGAGGACTGAGAGCGGTGAAGATATAACGGG- 242337 Query 181796 TTGAGAAGC---GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAG 181852 |||||| |||||| || || |||||||||||| || |||||| | ||| || Sbjct 242338 --CAGAAGCGGAGTCTTTGCCGCCGGAGAGACGCGTACCGAACTGACCATAGGGCATCAG 242395 Query 181853 AAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTA-TCCGCA- 181910 || || | |||||| |||||| | |||| | ||| | | ||||| || | | || Sbjct 242396 CAGATTGAGGTTGTTGGAACCTACAAAGTCCTGGGCTA---GACCGATGATAGTGCCCAT 242452 Query 181911 -AGGGACACTTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGC-CAACTGTG 181968 || ||||| || ||||||||||| | ||| | || || || |||| |||||| | Sbjct 242453 GAGAGACACCTCGCCGTGGTGGTAGGAGGACATCTCTGCCAC-GGCACCGCACAACTGAG 242511 Query 181969 CCACCTTCATTTC 181981 ||||||| || || Sbjct 242512 CCACCTTAATCTC 242524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024487167200