Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq948 113 5e-20 >seq948 Length=1705571 Score = 113 bits (124), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 ||| | ||| | || || | || ||| || |||||||| ||||||||| | | |||| Sbjct 191684 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 191743 Query 94777 TTTG---ATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 94833 ||| ||| ||| | | | | || ||||| || | ||||| || |||||| Sbjct 191744 ATTGCAAATAGGAAGGCTCCATAC---GCCGAGCGGCTAGTGGCATTCGCTGCTGTTGAA 191800 Query 94834 GGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 || | ||||| |||||||| || ||| |||| | ||||||||||||||| |||||||| Sbjct 191801 GGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGCGGTCTCAT 191859 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 |||||| ||| |||| ||||||| | ||| || || || || |||||| || || Sbjct 191860 GCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGACTT 191919 Query 94953 TGC 94955 ||| Sbjct 191920 TGC 191922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583253822742680