Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20granulosus_20[genbank_20GCA_5F000524195.1_202014-01- 28] 957 sequences; 110,837,706 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq953 147 2e-30 seq948 82.4 8e-11 >seq953 Length=2188470 Score = 147 bits (162), Expect = 2e-30 Identities = 390/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| ||| ||||| | || ||||| ||| | |||| |||||||| || || || Sbjct 251343 GAGAGGCCCCAGTATATGTTTATGCGCGTCTCTATCGGTATCCATGGTGAGGATCTT--- 251399 Query 19157 CGAGTCCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCC 19212 || | || ||||| ||| | || ||| | |||| || | || || | || Sbjct 251400 -GATGCTGCTATTGAGACGTACAATCTCATGTCCGGAAAGTGGTTGATTCATGCTTCACC 251458 Query 19213 GACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTAT 19272 || ||||| || || || ||| | || |||||||| ||||| || | | | || Sbjct 251459 CACTCTTTTTAATGCTGGGACGCCTATTCCTCAGATGTCCAGCTGCTTTTTGCTTACGAT 251518 Query 19273 GAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 ||| |||||||| ||||||||||| || || |||||||| | || || | ||||| || Sbjct 251519 GAAAGATGACAGTATTGAGGGCATATATGACACGCTCAAACAATGTGCACTTATCTCAAA 251578 Query 19333 GTGGTCCGGGGGTATCGGGATCCACTGCTCGAA-TATCCGGTCGAGTGGTACACGAATCA 19391 | | || || ||||| || | || || ||||||| | || || ||| Sbjct 251579 AAGTGCTGGTGGAATCGGTCTCAA-TGTTCATTGTATCCGGAGTAAGGGCACTTTCATCG 251637 Query 19392 ATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGG 19451 |||||| || || | || ||||| | || || ||||| || |||||||||| || | Sbjct 251638 CTGGGACTAATGGCGAGTCCAACGGTCTTGTACCGATGCTTCGGGTCTTCAACAGTACTG 251697 Query 19452 CCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGC 19511 | |||| || | ||||||||| || || || | || ||||| || ||||| | Sbjct 251698 CTCGGTATGTTGATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAAC 251757 Query 19512 CATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGA 19571 | ||||| |||| || || | || | ||| | || |||| |||| |||||| Sbjct 251758 CGTGGCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAG 251817 Query 19572 TGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTG 19631 ||| || || |||||| || | ||||||||||| ||||||||| || |||| Sbjct 251818 CTCGCGCGCGAGATCTCTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTG 251877 Query 19632 -AGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || ||| | |||| | | ||| ||| ||||||||||| || || Sbjct 251878 AAGCAGG-TGGCCCATGGACCTTTATGGACCCCCACGAATGCCCCGGTCT 251926 >seq948 Length=1705571 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60342 AATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAG 60401 |||||||||||||| | ||||||| ||||| | ||||||||||||||||| |||||| Sbjct 192201 AATAACCCTTTCGATTTCATGGAGAATATCTCTCTAGAAGGGAAGACCAACTTTTTTGAG 192260 Query 60402 AAGCGGGTCGGGGATTAT 60419 ||||| |||| || ||| Sbjct 192261 AAGCGTGTCGCAGAGTAT 192278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518238272080